genbio-ai / AIDOView external linksLinks
AI-Driven Digital Organism (AIDO) is a system of multiscale foundation models for predicting, simulating and programming biology at all levels
☆144Sep 12, 2025Updated 5 months ago
Alternatives and similar repositories for AIDO
Users that are interested in AIDO are comparing it to the libraries listed below
Sorting:
- AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism (AIDO) by enabling researchers to adapt…☆104Updated this week
- Protein representation and design under a single training scheme☆24Dec 17, 2025Updated last month
- Bencharking pipeline for evaluating Transcriptomic representations for perturbation tasks☆12Nov 5, 2024Updated last year
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Dec 1, 2025Updated 2 months ago
- Annotated sequence data☆11Feb 2, 2025Updated last year
- Computational Optimization of DNA Activity (CODA)☆67Apr 3, 2025Updated 10 months ago
- SE(3) diffusion models for generating CDR loops☆10Feb 6, 2024Updated 2 years ago
- One protein is all you need (ICLR 2026)☆67Dec 17, 2025Updated last month
- ☆120Feb 3, 2026Updated last week
- CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes☆40Jun 17, 2025Updated 7 months ago
- Implementation of NeurIPS24 paper "Generalized Protein Pocket Generation with Prior-Informed Flow Matching"☆19May 15, 2025Updated 9 months ago
- Expert-Guided Protein Language Models enable Accurate and Blazingly Fast Fitness Prediction☆15Feb 6, 2026Updated last week
- Template-based protein design with Raygun☆77Feb 7, 2026Updated last week
- Official repository for DiffPepBuilder and DiffPepDock tools☆116Oct 24, 2025Updated 3 months ago
- gRNAde is a Generative AI framework for inverse design of 3D RNA structure and function☆287Dec 16, 2025Updated last month
- Making Protein Language Modeling Accessible to All Biologists☆148Updated this week
- Bilingual Language Model for Protein Sequence and Structure☆297Jan 2, 2025Updated last year
- GAME was designed for the functional genomics community to create seamless communication across pre-trained models and genomics datasets.…☆19Feb 2, 2026Updated last week
- ☆15Mar 25, 2016Updated 9 years ago
- ☆17Mar 26, 2024Updated last year
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆14Nov 14, 2025Updated 3 months ago
- our in-house version of ProteinMPNN☆31Aug 15, 2025Updated 6 months ago
- ☆20Aug 25, 2025Updated 5 months ago
- ☆18Apr 30, 2025Updated 9 months ago
- ☆33Oct 14, 2024Updated last year
- ☆40Jul 28, 2025Updated 6 months ago
- ☆30Dec 12, 2024Updated last year
- This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)☆42Jun 17, 2024Updated last year
- Repository for mRNA Paper and CodonBERT publication.☆142Jun 12, 2024Updated last year
- A Python library for fast and easy access to genomic resources such as sequence, data tracks, and annotations☆59Feb 6, 2026Updated last week
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆224Aug 7, 2025Updated 6 months ago
- Machine learning prediction of enzyme optimum pH☆23Apr 29, 2025Updated 9 months ago
- ☆212Sep 24, 2024Updated last year
- The project of the downstream tasks based on LucaOne's Embedding.☆73Feb 6, 2026Updated last week
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆37Nov 7, 2024Updated last year
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆120May 27, 2025Updated 8 months ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆33Aug 10, 2023Updated 2 years ago
- Protein language model trained on coding DNA☆53Oct 20, 2024Updated last year
- Aligning protein generative models with experimental fitness☆117Oct 16, 2025Updated 3 months ago