AI-Driven Digital Organism (AIDO) is a system of multiscale foundation models for predicting, simulating and programming biology at all levels
☆158Sep 12, 2025Updated 7 months ago
Alternatives and similar repositories for AIDO
Users that are interested in AIDO are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism (AIDO) by enabling researchers to adapt…☆113Feb 25, 2026Updated 2 months ago
- ☆14Updated this week
- Protein representation and design under a single training scheme☆24Updated this week
- Bencharking pipeline for evaluating Transcriptomic representations for perturbation tasks☆12Nov 5, 2024Updated last year
- CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes☆44Jun 17, 2025Updated 10 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆71Feb 21, 2026Updated 2 months ago
- Expert-Guided Protein Language Models enable Accurate and Blazingly Fast Fitness Prediction☆17Feb 6, 2026Updated 2 months ago
- Implementation of NeurIPS24 paper "Generalized Protein Pocket Generation with Prior-Informed Flow Matching"☆20May 15, 2025Updated 11 months ago
- [ICML 2025] Fast and Low-Cost Genomic Foundation Models via Outlier Removal.☆18Jun 19, 2025Updated 10 months ago
- ☆33Oct 14, 2024Updated last year
- gRNAde is a Generative AI framework for inverse design of 3D RNA structure and function☆297Dec 16, 2025Updated 4 months ago
- One protein is all you need (ICLR 2026)☆105Apr 22, 2026Updated last week
- Fast Vision Mamba : Pool your Spatial Dimensions for Accelerated Processing☆18Jan 28, 2025Updated last year
- Annotated sequence data☆11Feb 2, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆20Apr 30, 2025Updated 11 months ago
- Machine learning prediction of enzyme optimum pH☆25Apr 29, 2025Updated last year
- ☆41Jul 28, 2025Updated 9 months ago
- An SKLearn-style toolbox for estimating and analyzing models, distributions, and functions with context-specific parameters.☆77Mar 6, 2026Updated last month
- GAME was designed for the functional genomics community to create seamless communication across pre-trained models and genomics datasets.…☆19Apr 17, 2026Updated last week
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆14Nov 14, 2025Updated 5 months ago
- ☆128Feb 20, 2026Updated 2 months ago
- Official repository for DiffPepBuilder and DiffPepDock tools☆125Oct 24, 2025Updated 6 months ago
- Protein language model trained on coding DNA☆54Oct 20, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆213Sep 24, 2024Updated last year
- Computational Optimization of DNA Activity (CODA)☆67Apr 3, 2025Updated last year
- SE(3) diffusion models for generating CDR loops☆10Feb 6, 2024Updated 2 years ago
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆44Aug 5, 2025Updated 8 months ago
- Template-based protein design with Raygun☆80Apr 12, 2026Updated 2 weeks ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆246Mar 26, 2026Updated last month
- Implementation of MapDiff: "Mask-prior-guided denoising diffusion improves inverse protein folding" in PyTorch☆47Jul 11, 2025Updated 9 months ago
- our in-house version of ProteinMPNN☆37Feb 12, 2026Updated 2 months ago
- This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)☆43Jun 17, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Making Protein Language Modeling Accessible to All Biologists☆161Updated this week
- RAG-ESM is a retrieval-augmented framework that allows to condition pretrained ESM2 protein language models on homologous sequences☆27Aug 21, 2025Updated 8 months ago
- Efficient implementatin of ESM family.☆84Sep 9, 2025Updated 7 months ago
- ☆31Dec 12, 2024Updated last year
- Repository for mRNA Paper and CodonBERT publication.☆144Jun 12, 2024Updated last year
- Bilingual Language Model for Protein Sequence and Structure☆309Mar 6, 2026Updated last month
- ☆17Mar 26, 2024Updated 2 years ago