genbio-ai / AIDO
AI-Driven Digital Organism (AIDO) is a system of multiscale foundation models for predicting, simulating and programming biology at all levels
☆42Updated 2 weeks ago
Alternatives and similar repositories for AIDO:
Users that are interested in AIDO are comparing it to the libraries listed below
- AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism (AIDO) by enabling researchers to adapt…☆27Updated 3 weeks ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆68Updated this week
- Efficient implementatin of ESM family.☆45Updated 3 weeks ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆56Updated 8 months ago
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆78Updated 3 weeks ago
- Protein language model trained on coding DNA☆42Updated 2 months ago
- RiboNucleic Acid (RNA) Language Model☆79Updated 2 months ago
- Repository for mRNA Paper and CodonBERT publication.☆117Updated 7 months ago
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆44Updated 5 months ago
- Repository for Protein-Vec, a protein embedding mixture of experts model☆37Updated 11 months ago
- Aligning protein generative models with experimental fitness☆79Updated 2 months ago
- Results and data from the pilot round of the Protein Engineering Tournament☆26Updated last month
- RNA Multiple Sequence Alignment☆29Updated last year
- PLM based active learning model for protein engineering☆71Updated 5 months ago
- Primary RNA sequence model☆31Updated 7 months ago
- Biological prediction models made simple.☆37Updated last week
- Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation☆63Updated this week
- Directed evolution of proteins in sequence space with gradients☆78Updated 5 months ago
- Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape☆27Updated 4 months ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆96Updated 3 weeks ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆56Updated 3 years ago
- ☆57Updated 9 months ago
- ☆36Updated 3 months ago
- ☆66Updated 3 months ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆29Updated 3 months ago
- Contrastive learning harmonizing protein language models and natural language models☆27Updated 7 months ago
- ☆85Updated 2 months ago
- Template-based protein design with Raygun☆49Updated 2 months ago
- Code repository of "Deep generative design of RNA family sequences"☆30Updated 6 months ago
- ☆33Updated this week