Adibvafa / CodonTransformerLinks
CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 species.
☆168Updated last week
Alternatives and similar repositories for CodonTransformer
Users that are interested in CodonTransformer are comparing it to the libraries listed below
Sorting:
- RiboNucleic Acid (RNA) Language Model☆117Updated 2 months ago
- ☆89Updated last month
- Repository for mRNA Paper and CodonBERT publication.☆133Updated last year
- De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments☆93Updated last month
- ☆69Updated 3 months ago
- ☆90Updated 9 months ago
- Protein language model trained on coding DNA☆47Updated 9 months ago
- Geometric deep learning of protein–DNA binding specificity☆76Updated 4 months ago
- ☆77Updated last year
- Bilingual Language Model for Protein Sequence and Structure☆262Updated 7 months ago
- AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism (AIDO) by enabling researchers to adapt…☆88Updated last week
- Evolutionary velocity with protein language models☆93Updated last year
- Official release of the ProGen models☆34Updated 6 months ago
- Neural Networks for Protein Sequence Alignment☆124Updated 8 months ago
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆172Updated 2 months ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆100Updated 2 weeks ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆177Updated last year
- Primary RNA sequence model☆38Updated last year
- ☆68Updated 10 months ago
- RNN-based Codon Optimization Tool. Publication: https://doi.org/10.1186/s12859-023-05246-8☆68Updated 2 years ago
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆138Updated last month
- Code repository of "Deep generative design of RNA family sequences"☆35Updated last year
- Official implement of paper "Multi-purpose RNA Language Modeling with Motif-aware Pre-training and Type-guided Fine-tuning"☆48Updated 10 months ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆115Updated 11 months ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆154Updated 3 months ago
- Efficient evolution from protein language models☆211Updated last year
- ☆35Updated last year
- python tools for TCR:peptide-MHC modeling and analysis☆80Updated last year
- ☆112Updated last year
- Multiple Protein Structure Alignment at Scale with FoldMason☆184Updated last week