Adibvafa / CodonTransformerLinks
CodonTransformer (1M+ Downloads); The tool for codon optimization, optimizing DNA for protein expression
☆191Updated 5 months ago
Alternatives and similar repositories for CodonTransformer
Users that are interested in CodonTransformer are comparing it to the libraries listed below
Sorting:
- Official release of the ProGen models☆52Updated 11 months ago
- ☆92Updated last year
- RiboNucleic Acid (RNA) Language Model☆150Updated 3 months ago
- ☆97Updated 7 months ago
- Learning the language of protein-protein interactions☆120Updated last week
- Geometric deep learning of protein–DNA binding specificity☆76Updated 10 months ago
- ☆77Updated 8 months ago
- Repository for mRNA Paper and CodonBERT publication.☆141Updated last year
- De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments☆111Updated last month
- Protein language model trained on coding DNA☆53Updated last year
- Bilingual Language Model for Protein Sequence and Structure☆290Updated last year
- python tools for TCR:peptide-MHC modeling and analysis☆87Updated last year
- Code repository of "Deep generative design of RNA family sequences"☆40Updated 2 months ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆114Updated 5 months ago
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆154Updated this week
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆170Updated 8 months ago
- ☆76Updated last year
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆106Updated last week
- Evolutionary velocity with protein language models☆95Updated last month
- Neural Networks for Protein Sequence Alignment☆135Updated last year
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆41Updated last year
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆121Updated last year
- ☆38Updated 2 years ago
- Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.☆85Updated 11 months ago
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆77Updated 4 months ago
- Biological prediction models made simple.☆48Updated this week
- ☆77Updated last year
- Efficient evolution from protein language models☆218Updated 2 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆189Updated last year
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆60Updated last month