Adibvafa / CodonTransformerLinks
CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 species.
☆175Updated last month
Alternatives and similar repositories for CodonTransformer
Users that are interested in CodonTransformer are comparing it to the libraries listed below
Sorting:
- Repository for mRNA Paper and CodonBERT publication.☆134Updated last year
- RiboNucleic Acid (RNA) Language Model☆126Updated 3 months ago
- ☆93Updated 3 months ago
- Evolutionary velocity with protein language models☆94Updated last year
- ☆69Updated 4 months ago
- ☆90Updated 11 months ago
- Protein language model trained on coding DNA☆49Updated 10 months ago
- Bilingual Language Model for Protein Sequence and Structure☆268Updated 8 months ago
- De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments☆98Updated last week
- AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism (AIDO) by enabling researchers to adapt…☆94Updated last week
- Geometric deep learning of protein–DNA binding specificity☆75Updated 6 months ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆156Updated 4 months ago
- python tools for TCR:peptide-MHC modeling and analysis☆82Updated last year
- ☆36Updated last year
- Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.☆75Updated 7 months ago
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆142Updated 2 months ago
- Biological prediction models made simple.☆44Updated 3 weeks ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆104Updated last week
- Learning the language of protein-protein interactions☆92Updated 3 weeks ago
- Efficient evolution from protein language models☆215Updated 2 years ago
- Official release of the ProGen models☆35Updated 7 months ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆119Updated last year
- ☆68Updated 11 months ago
- Neural Networks for Protein Sequence Alignment☆125Updated 10 months ago
- Install alphafold on the local machine, get out of docker.☆104Updated 3 years ago
- Multiple Protein Structure Alignment at Scale with FoldMason☆187Updated this week
- ☆78Updated last year
- open source code for Tencent tFold☆112Updated 6 months ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year
- PLM based active learning model for protein engineering☆82Updated last year