CodonTransformer (2M+ Downloads); The tool for codon optimization, optimizing DNA for protein expression
☆219Jul 27, 2025Updated last year
Alternatives and similar repositories for CodonTransformer
Users that are interested in CodonTransformer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆44Sep 12, 2024Updated last year
- RNN-based Codon Optimization Tool. Publication: https://doi.org/10.1186/s12859-023-05246-8☆71Apr 10, 2023Updated 3 years ago
- https://www.nature.com/articles/s41598-020-74091-z#Tab1☆40Mar 13, 2024Updated 2 years ago
- Plasmid.ai is the largest open-source toolkit for developing plasmid foundation models.☆14Jan 22, 2025Updated last year
- Protein language model trained on coding DNA☆54Oct 20, 2024Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆17Dec 17, 2025Updated 7 months ago
- ☆12Jul 15, 2026Updated 3 weeks ago
- A neural based approach to the task of genetic codon optimization☆18Aug 17, 2020Updated 5 years ago
- A biological dual-language foundation model☆12Jun 16, 2025Updated last year
- ☆58May 26, 2026Updated 2 months ago
- ☆32Feb 5, 2025Updated last year
- A visualization software for antibody multi sequence alignment☆23Jun 15, 2024Updated 2 years ago
- This repository hosts the software of GEMORNA, a generative AI tool for mRNA sequence design.☆99Nov 11, 2025Updated 8 months ago
- Simple Python program to perform codon optimization or heterology calculations.☆12Apr 13, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- BioReason: Incentivizing Multimodal Biological Reasoning within a DNA-LLM Model | NeurIPS '25☆401May 28, 2026Updated 2 months ago
- Protein representation and design under a single training scheme☆24May 17, 2026Updated 2 months ago
- Codon optimizer for tissue-specific expression☆17Sep 26, 2024Updated last year
- User friendly and accurate binder design pipeline☆1,182May 11, 2026Updated 2 months ago
- ☆20Dec 5, 2024Updated last year
- openASO is a project designed to identify regulatory regions of an RNA that can be targeted by antisense oligonucleotides.☆14Sep 30, 2021Updated 4 years ago
- Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation☆165Jul 25, 2026Updated 2 weeks ago
- ☆24Nov 6, 2024Updated last year
- ☆23Jun 10, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Supporting code for our paper "Protein Sequence Modelling with Bayesian Flow Networks"☆53Mar 3, 2025Updated last year
- Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion☆19Feb 8, 2024Updated 2 years ago
- ☆16Feb 14, 2025Updated last year
- ☆21Mar 20, 2025Updated last year
- Official repository of EnzymeFlow☆103Dec 7, 2024Updated last year
- Fast protein backbone flexibility prediction model☆36Jan 4, 2026Updated 7 months ago
- ☆14Oct 29, 2024Updated last year
- Official repository of GENzyme☆67Nov 29, 2024Updated last year
- ☆12Dec 12, 2025Updated 7 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆27May 16, 2026Updated 2 months ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆127May 27, 2025Updated last year
- ☆18Jun 20, 2025Updated last year
- Repository for mRNA Paper and CodonBERT publication.☆145May 19, 2026Updated 2 months ago
- Paper collection for single cell foundation models☆41Mar 17, 2024Updated 2 years ago
- iCodon customizes gene expression based on the codon composition☆16Oct 28, 2023Updated 2 years ago
- Code for paper: "Fine-Tuning Discrete Diffusion Models via Reward Optimization with Applications to DNA and Protein Design"☆76May 10, 2025Updated last year