Alternatives and similar repositories for scDrug:

Users that are interested in scDrug are comparing it to the libraries listed below

• lanagarmire / Asgard
  ☆41Updated last year
• Roy-lab / scMTNI
  ☆25Updated 3 months ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆71Updated 3 months ago
• Teichlab / celltypist_wiki
  Materials and scripts for building cell type encyclopedia table
  ☆19Updated 2 months ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆35Updated 2 years ago
• lanagarmire / Single-cell-drug-repositioning
  ☆16Updated 8 months ago
• cnio-bu / beyondcell
  Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq …
  ☆49Updated 6 months ago
• OSU-BMBL / scDEAL
  Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
  ☆52Updated 8 months ago
• SmritiChawla / Precily
  ☆30Updated 2 years ago
• ZJUFanLab / scRank
  A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…
  ☆45Updated 7 months ago
• ZJUFanLab / scSpace
  an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…
  ☆22Updated last year
• QuKunLab / MultiomeBenchmarking
  ☆42Updated 3 weeks ago
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆38Updated 6 months ago
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆38Updated 6 months ago
• czi-ai / scGenePT
  ☆14Updated 2 months ago
• s175573 / DeepCAT
  Deep Learning Method to Identify Cancer Associated TCRs
  ☆46Updated 2 years ago
• xiaoyeye / TFvelo
  ☆44Updated 10 months ago
• ImmucanWP7 / immucan-scdb
  ☆16Updated last year
• datapplab / AutoClass
  ☆45Updated 2 years ago
• icbi-lab / luca
  Single-cell Lung Cancer Atlas with 1.2M cells
  ☆61Updated 2 months ago
• dpeerlab / scKINETICS
  Code for scKINETICS (ISMB 2023)
  ☆21Updated last year
• getzlab / CLUMPS-PTM
  CLUMPS adapted to post-translational modifications.
  ☆9Updated last year
• alexyermanos / Platypus
  R package for the analysis of single-cell immune repertoires
  ☆42Updated last month
• cailab-tamu / scTenifoldNet
  A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data
  ☆22Updated 3 months ago
• SchubertLab / mvTCR
  ☆50Updated 4 months ago
• mcgilldinglab / CellAgentChat
  Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data
  ☆28Updated last week
• jlakkis / sciPENN
  ☆17Updated 2 years ago
• MiraldiLab / maxATAC
  Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
  ☆28Updated last month
• CSB5 / CaDRReS-Sc
  CaDRReS-Sc is a framework for analyzing drug response heterogeneity based on single-cell RNA-seq data
  ☆14Updated 2 years ago
• JiangBioLab / DeepCCI
  ☆21Updated 2 years ago