ailabstw / scDrug
scDrug: From scRNA-seq to Drug Repositioning
☆29Updated last year
Related projects: ⓘ
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆32Updated last month
- an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…☆21Updated last year
- ☆39Updated 8 months ago
- ☆14Updated 2 months ago
- ☆20Updated 4 months ago
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆45Updated last month
- ☆18Updated 3 years ago
- Gene group activity utility functions for Scanpy☆49Updated last month
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆38Updated 3 months ago
- Functional Embedding of Gene Signatures☆31Updated 6 months ago
- GeneCompass☆32Updated 2 months ago
- Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq …☆40Updated this week
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆31Updated 5 months ago
- ☆19Updated 2 years ago
- ☆39Updated 4 months ago
- Materials and scripts for building cell type encyclopedia table☆14Updated 2 weeks ago
- Reproducing the experiments of the DestVI paper☆17Updated 2 years ago
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆24Updated last month
- ☆44Updated last month
- ☆28Updated 7 months ago
- ☆38Updated 2 months ago
- ☆40Updated last week
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆22Updated last year
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆13Updated 2 weeks ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆30Updated last year
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆29Updated 2 years ago
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆34Updated 2 years ago
- SIMBA: SIngle-cell eMBedding Along with features☆54Updated 11 months ago
- repository containing analysis scripts and auxiliary files☆29Updated 4 years ago
- ☆28Updated 2 years ago