ailabstw / scDrug
scDrug: From scRNA-seq to Drug Repositioning
☆29Updated last year
Related projects ⓘ
Alternatives and complementary repositories for scDrug
- an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…☆21Updated last year
- ☆21Updated 6 months ago
- ☆40Updated 10 months ago
- ☆14Updated 4 months ago
- ☆40Updated 6 months ago
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆48Updated 4 months ago
- ☆29Updated 2 years ago
- ☆29Updated 10 months ago
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆38Updated 3 months ago
- Functional Embedding of Gene Signatures☆36Updated 8 months ago
- Gene group activity utility functions for Scanpy☆56Updated 3 months ago
- Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq …☆43Updated 2 months ago
- Materials and scripts for building cell type encyclopedia table☆15Updated 2 months ago
- ☆14Updated last year
- CaDRReS-Sc is a framework for analyzing drug response heterogeneity based on single-cell RNA-seq data☆14Updated 2 years ago
- ☆20Updated 2 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆37Updated 2 months ago
- Reproducing the experiments of the DestVI paper☆17Updated 2 years ago
- ☆45Updated 3 weeks ago
- ☆31Updated 3 months ago
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆18Updated 2 months ago
- PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.☆26Updated 10 months ago
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆50Updated 5 months ago
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆34Updated 7 months ago
- ☆45Updated 2 months ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆30Updated last year
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆37Updated last year
- ☆48Updated 4 months ago
- ☆16Updated last year
- ☆12Updated 7 months ago