Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
☆62Jul 22, 2024Updated last year
Alternatives and similar repositories for scDEAL
Users that are interested in scDEAL are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Mar 19, 2024Updated 2 years ago
- R code used to analyze single cell PDAC data☆42Jun 29, 2024Updated last year
- Lung cancer 10X analysis☆11Dec 30, 2020Updated 5 years ago
- A collection of bioinformatics data analysis notebooks focused on providing examples of current best practices in sequencing data analysi…☆17Apr 27, 2026Updated last month
- ☆16May 21, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆17Feb 20, 2025Updated last year
- ☆12Mar 5, 2024Updated 2 years ago
- Cell Annotation using Machine Learning-based method for the presence of Unknown cells (CAMLU)☆13May 19, 2025Updated last year
- NEPAL is to calculate neuroendocrine (NE) risk score from bulk and single-cell transcriptomics of both human and mouse prostate cancer (P…☆14Apr 23, 2024Updated 2 years ago
- R toolkit for inference and analysis of pathway-mediated cell-cell communication chain from single-cell transcriptomics☆37Mar 10, 2025Updated last year
- ☆21Mar 4, 2024Updated 2 years ago
- Functions to analyze copy number aberrations in single-cell data☆13Feb 3, 2025Updated last year
- This repository holds the scripts used to analyze the data presented in "A multi-omic single-cell landscape of human gynecologic malignan…☆50Nov 10, 2023Updated 2 years ago
- scDrug: From scRNA-seq to Drug Repositioning☆45May 8, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆49Nov 29, 2025Updated 6 months ago
- ☆12Dec 4, 2023Updated 2 years ago
- Code repository for single cell RNA-seq☆42Oct 12, 2020Updated 5 years ago
- ☆14Nov 2, 2017Updated 8 years ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆33Jul 13, 2024Updated last year
- Public repo for STEP: Spatial Transcriptomics Embedding Procedure☆17Nov 13, 2024Updated last year
- ☆130Mar 27, 2022Updated 4 years ago
- ☆89Jun 29, 2024Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆16Apr 11, 2022Updated 4 years ago
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆32Jun 19, 2024Updated last year
- This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Pro…☆90Oct 9, 2024Updated last year
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Mar 25, 2024Updated 2 years ago
- Drug Response Estimation from single-cell Expression Profiles☆12Jan 5, 2024Updated 2 years ago
- SLICER algorithm for inferring cell trajectories. See details in Welch et al., Genome Biology 2016: http://genomebiology.biomedcentral.co…☆16Oct 17, 2017Updated 8 years ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆115Jun 9, 2025Updated 11 months ago
- Gene group activity utility functions for Scanpy☆105Dec 21, 2024Updated last year
- Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma☆81Oct 29, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Bioinformatics Pipeline☆12Oct 7, 2022Updated 3 years ago
- collected resource for scRNA-seq analysis☆66Jul 19, 2023Updated 2 years ago
- ☆23Apr 17, 2026Updated last month
- ☆58Feb 23, 2024Updated 2 years ago
- scRNA-seq analysis of EENT-ONB☆22Jan 14, 2024Updated 2 years ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆102May 20, 2026Updated last week
- Code repository site for manuscript: Unraveling the Heterogeneity of Tumor-Infiltrating Myeloid Cells in Immune Checkpoint Blockade: A Si…☆13Jun 24, 2023Updated 2 years ago