OSU-BMBL / scDEALLinks
Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
☆58Updated last year
Alternatives and similar repositories for scDEAL
Users that are interested in scDEAL are comparing it to the libraries listed below
Sorting:
- ☆44Updated last year
- ☆50Updated 9 months ago
- ☆43Updated 3 years ago
- ☆19Updated last year
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆61Updated 2 months ago
- PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.☆29Updated last year
- UNAGI: deep generative AI for virtual disease and unsuperivsed in-silico perturbations.☆46Updated last week
- PyTorch implementation of the MIDAS algorithm for single-cell multimodal data integration (Nature Biotechnology 2024).☆61Updated 3 weeks ago
- ☆72Updated 4 months ago
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆27Updated last year
- ☆33Updated 3 years ago
- ☆59Updated this week
- Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data☆34Updated 3 weeks ago
- ☆30Updated 4 months ago
- an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…☆23Updated 2 years ago
- Gene group activity utility functions for Scanpy☆99Updated last year
- ☆18Updated 3 years ago
- Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space☆79Updated 3 months ago
- ☆119Updated 6 months ago
- Predict RNA velocity through deep learning☆71Updated 2 years ago
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆111Updated 2 months ago
- ☆41Updated 7 months ago
- Additional code and analysis from the single-cell integration benchmarking project☆71Updated 3 years ago
- Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network☆106Updated 2 years ago
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆26Updated 6 months ago
- Transformer for One-Stop Interpretable Cell-type Annotation☆146Updated last year
- ☆40Updated 2 years ago
- domain adaptation of spatial and single-cell transcriptome☆28Updated last year
- scDrug: From scRNA-seq to Drug Repositioning☆36Updated 2 years ago
- ☆94Updated last month