Alternatives and similar repositories for datahub

Users that are interested in datahub are comparing it to the libraries listed below

• oncokb / oncokb-annotator
  Annotates variants in MAF with OncoKB annotation.
  ☆132Updated 3 weeks ago
• AlexandrovLab / SigProfilerExtractor
  SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…
  ☆162Updated last week
• bioFAM / MOFA
  Multi-Omics Factor Analysis
  ☆247Updated 4 years ago
• Hoohm / dropSeqPipe
  A SingleCell RNASeq pre-processing snakemake workflow
  ☆149Updated 2 years ago
• broadinstitute / gtex-pipeline
  GTEx & TOPMed data production and analysis pipelines
  ☆374Updated last month
• mskcc / RNAseqDB
  ☆141Updated 7 years ago
• broadinstitute / ichorCNA
  Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
  ☆185Updated last year
• mdozmorov / TCGAsurvival
  Scripts to analyze TCGA data
  ☆121Updated last year
• statgen / pheweb
  A tool to build a website to browse hundreds or thousands of GWAS.
  ☆183Updated 11 months ago
• mskcc / vcf2maf
  Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
  ☆389Updated 7 months ago
• davidaknowles / leafcutter
  Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …
  ☆221Updated last year
• hakyimlab / MetaXcan
  MetaXcan software and manuscript
  ☆168Updated 2 weeks ago
• hbctraining / Intro-to-rnaseq-hpc-O2
  This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster
  ☆170Updated 4 years ago
• hms-dbmi / scde
  R package for analyzing single-cell RNA-seq data
  ☆175Updated last year
• zhangyuqing / ComBat-seq
  Batch effect adjustment based on negative binomial regression for RNA sequencing count data
  ☆182Updated 4 years ago
• dviraran / xCell
  Cell types enrichment analysis
  ☆198Updated last year
• Cloufield / gwaslab
  A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/
  ☆224Updated last week
• sztup / scarHRD
  ☆116Updated last year
• bli25 / RSEM_tutorial
  A short tutorial on how to use RSEM
  ☆137Updated 5 years ago
• TrinityCTAT / Trinity_CTAT
  ☆117Updated last year
• broadinstitute / tensorqtl
  Ultrafast GPU-enabled QTL mapper
  ☆184Updated 2 weeks ago
• Boyle-Lab / Blacklist
  Application for making ENCODE Blacklists
  ☆313Updated 4 years ago
• freeseek / gtc2vcf
  Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF
  ☆154Updated 5 months ago
• 10XGenomics / vartrix
  Single-Cell Genotyping Tool
  ☆209Updated last year
• ENCODE-DCC / chip-seq-pipeline
  ENCODE Uniform processing pipeline for ChIP-seq
  ☆123Updated 5 years ago
• raerose01 / deconstructSigs
  deconstructSigs
  ☆142Updated 2 years ago
• YeoLab / single-cell-bioinformatics
  Course material in notebook format for learning about single cell bioinformatics methods
  ☆99Updated 9 years ago
• mikessh / vdjtools
  [REPLACED by https://github.com/antigenomics/mirpy] Post-analysis of immune repertoire sequencing data
  ☆140Updated last year
• cancer-genomics / delfi_scripts
  ☆73Updated 4 years ago
• molgenis / systemsgenetics
  Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool
  ☆173Updated 7 months ago