A nextflow pipeline for calling modifications in nanopore reads.
☆17Sep 28, 2026Updated last week
Alternatives and similar repositories for dogme
Users that are interested in dogme are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Aug 24, 2026Updated last month
- Sturgeon is a CNS neural network classifier☆51Sep 4, 2026Updated last month
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆38Apr 7, 2026Updated 6 months ago
- A python command line tool to generate modbed files for visualization on WashU Epigenome Browser☆11Aug 7, 2026Updated 2 months ago
- Realtime base modification frequency tool☆15Sep 16, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Genotyping of paralog specific gene types☆22Aug 28, 2026Updated last month
- GUI for inspecting POD5 files☆35Dec 19, 2024Updated last year
- Compute mean telomere length from Whole Genome Sequencing data.☆15Feb 15, 2024Updated 2 years ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆58Aug 28, 2026Updated last month
- Rapid and accurate ancestry inference using SNVs.☆30Aug 15, 2025Updated last year
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Jun 4, 2023Updated 3 years ago
- ☆23Aug 13, 2026Updated last month
- An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads☆16Sep 26, 2026Updated last week
- Analyse RNA feature distributions.☆21Dec 16, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat☆30Apr 24, 2026Updated 5 months ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆46Updated this week
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated 2 years ago
- Pipeline for the analysis of ribosome profiling, or Ribo-seq (also named ribosome footprinting) data.☆38Sep 17, 2026Updated 3 weeks ago
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Jun 23, 2023Updated 3 years ago
- CLI to automate Nextflow pipeline testing☆13Dec 15, 2025Updated 9 months ago
- fastrgz is a fast and efficient gzip compression tool for sequencing data (FASTQ)☆31Jun 18, 2026Updated 3 months ago
- For when you just need a coverage plot.☆11Mar 26, 2021Updated 5 years ago
- GitHub Action to Sync subtrees with a source project☆11Oct 16, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆19Apr 11, 2023Updated 3 years ago
- Giraffe_View is designed to help assess and visualize the accuracy of long-read sequencing datasets.☆13Sep 3, 2024Updated 2 years ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆90Updated this week
- ☆27Dec 29, 2020Updated 5 years ago
- Leviathan: A fast, memory-efficient, and scalable taxonomic and pathway profiler for (pan)genome-resolved metagenomics and metatranscript…☆28Sep 8, 2026Updated last month
- This tutorial is a guide to perform TWAS with the data used in Torres‐Rodríguez, J. Vladimir, et al. "Population‐level gene expression ca…☆27Feb 23, 2026Updated 7 months ago
- Simultaneous exploration of thousands of long-read transcriptomes by read-level indexing☆45Updated this week
- ☆12May 6, 2021Updated 5 years ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆190Oct 1, 2026Updated last week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- WDL workflows for variant calling and assembly using ONT☆40Oct 1, 2026Updated last week
- Nanopore direct RNA basecaller☆11Oct 27, 2022Updated 3 years ago
- A new tool to infer sex from massively parallel sequencing data.☆17May 16, 2025Updated last year
- Some sleuth walkthroughs to help you get started☆10Jul 26, 2018Updated 8 years ago
- Genome-on-Diet is a fast and memory-frugal framework for exemplifying sparsified genomics for read mapping, containment search, and metag…☆18Sep 4, 2024Updated 2 years ago
- kallisto index tag extractor☆20Jul 6, 2019Updated 7 years ago
- ☆262Oct 1, 2026Updated last week