hbctraining / Intro-to-bulk-RNAseqLinks
Introduction to bulk RNA-seq
☆134Updated 8 months ago
Alternatives and similar repositories for Intro-to-bulk-RNAseq
Users that are interested in Intro-to-bulk-RNAseq are comparing it to the libraries listed below
Sorting:
- Step-by-step analysis pipeline for RNA-seq data☆161Updated 2 years ago
- ☆212Updated 5 months ago
- ☆102Updated 3 months ago
- A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression an…☆117Updated 5 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆221Updated last month
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆237Updated last month
- This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster☆174Updated 4 years ago
- ☆145Updated 7 years ago
- Application for making ENCODE Blacklists☆332Updated 4 years ago
- Single cell RNA sequencing analysis course☆233Updated last week
- ☆286Updated 2 months ago
- SIB course on single cell transcriptomics by mostly using the Seurat pipeline☆86Updated this week
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆275Updated 2 months ago
- Batch effect adjustment based on negative binomial regression for RNA sequencing count data☆201Updated 5 years ago
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆246Updated 6 months ago
- A short tutorial on how to use RSEM☆139Updated 5 years ago
- A collection of scripts and notes related to genomics and bioinformatics☆218Updated last month
- Analysis of single cell RNA-seq data course☆161Updated 3 years ago
- Intro to ChIPseq using HPC☆320Updated 2 years ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆288Updated last year
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆229Updated last month
- my notes for scATACseq analysis☆133Updated last year
- Tool for plotting sequencing data along genomic coordinates.☆335Updated last month
- parallel fastq-dump wrapper☆302Updated 2 years ago
- RNA-seq workflow using STAR and DESeq2☆351Updated last month
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆178Updated last month
- ☆157Updated 3 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆120Updated 3 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆251Updated this week
- T/B cell receptor sequencing analysis notes☆271Updated last year