Alternatives and similar repositories for Intro-to-bulk-RNAseq:

Users that are interested in Intro-to-bulk-RNAseq are comparing it to the libraries listed below

• hbctraining / Investigating-chromatin-biology-ChIPseq
  ☆88Updated last month
• loosolab / TOBIAS
  Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
  ☆209Updated 2 months ago
• CebolaLab / RNA-seq
  Step-by-step analysis pipeline for RNA-seq data
  ☆106Updated last year
• hbctraining / Intro-to-DGE
  ☆192Updated last week
• crazyhottommy / scATACseq-analysis-notes
  my notes for scATACseq analysis
  ☆122Updated 11 months ago
• harvardinformatics / ATAC-seq
  ☆129Updated 6 years ago
• nf-core / cutandrun
  Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …
  ☆89Updated last week
• nf-core / atacseq
  ATAC-seq peak-calling and QC analysis pipeline
  ☆197Updated 2 weeks ago
• mhammell-laboratory / TEtranscripts
  A package for including transposable elements in differential enrichment analysis of sequencing datasets.
  ☆244Updated last month
• CebolaLab / ATAC-seq
  Analysis pipeline for ATAC-seq data
  ☆51Updated last year
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆194Updated 6 months ago
• Boyle-Lab / Blacklist
  Application for making ENCODE Blacklists
  ☆295Updated 3 years ago
• jsh58 / Genrich
  Detecting sites of genomic enrichment
  ☆189Updated last year
• FredHutch / SEACR
  SEACR: Sparse Enrichment Analysis for CUT&RUN
  ☆108Updated 2 years ago
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆185Updated last month
• bli25 / RSEM_tutorial
  A short tutorial on how to use RSEM
  ☆136Updated 4 years ago
• dviraran / xCell
  Cell types enrichment analysis
  ☆194Updated 10 months ago
• cellgeni / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆132Updated 2 years ago
• ENCODE-DCC / rna-seq-pipeline
  ☆147Updated 2 years ago
• erilu / bulk-rnaseq-analysis
  A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression an…
  ☆79Updated 4 years ago
• NBISweden / workshop-scRNAseq
  Single cell RNA sequencing analysis course
  ☆205Updated this week
• BaderLab / CellAnnotationTutorial
  Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
  ☆91Updated 2 years ago
• snakemake-workflows / single-cell-rna-seq
  A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.
  ☆101Updated 2 years ago
• hbctraining / Intro-to-ChIPseq
  Intro to ChIPseq using HPC
  ☆300Updated 2 years ago
• sib-swiss / single-cell-training
  SIB course on single cell transcriptomics by mostly using the Seurat pipeline
  ☆82Updated 2 weeks ago
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆137Updated 3 years ago
• PoisonAlien / trackplot
  Generate IGV style locus tracks from bigWig files in R
  ☆156Updated 5 months ago
• liulab-dfci / MAESTRO
  Single-cell Transcriptome and Regulome Analysis Pipeline
  ☆278Updated 2 years ago
• navinlabcode / copykat
  ☆228Updated 9 months ago
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆339Updated 7 months ago