hbctraining / Intro-to-bulk-RNAseqLinks
Introduction to bulk RNA-seq
☆124Updated 5 months ago
Alternatives and similar repositories for Intro-to-bulk-RNAseq
Users that are interested in Intro-to-bulk-RNAseq are comparing it to the libraries listed below
Sorting:
- ☆97Updated 3 weeks ago
- ☆209Updated 2 months ago
- Step-by-step analysis pipeline for RNA-seq data☆147Updated 2 years ago
- This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster☆172Updated 4 years ago
- ☆141Updated 6 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆228Updated last month
- ATAC-seq peak-calling and QC analysis pipeline☆213Updated this week
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆266Updated last month
- Application for making ENCODE Blacklists☆324Updated 4 years ago
- A collection of scripts and notes related to genomics and bioinformatics☆217Updated 3 weeks ago
- ☆276Updated this week
- A short tutorial on how to use RSEM☆138Updated 5 years ago
- Batch effect adjustment based on negative binomial regression for RNA sequencing count data☆194Updated 5 years ago
- Analysis pipeline for ATAC-seq data☆78Updated last year
- A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression an…☆100Updated 5 years ago
- Intro to ChIPseq using HPC☆315Updated 2 years ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆286Updated last year
- RNA-seq workflow using STAR and DESeq2☆346Updated last month
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆115Updated 2 years ago
- Detecting sites of genomic enrichment☆195Updated 2 years ago
- ☆156Updated 2 years ago
- Single cell RNA sequencing analysis course☆224Updated last month
- SIB course on single cell transcriptomics by mostly using the Seurat pipeline☆84Updated 2 months ago
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆103Updated last week
- Quick mining and visualization of NGS data by integrating genomic databases☆266Updated 2 years ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆171Updated 5 months ago
- parallel fastq-dump wrapper☆299Updated 2 years ago
- Generate IGV style locus tracks from bigWig files in R☆172Updated last year
- dN/dS methods to quantify selection in cancer and somatic evolution☆226Updated 5 months ago
- my notes for scATACseq analysis☆132Updated last year