Alternatives and similar repositories for Accessing_public_genomic_data

Users that are interested in Accessing_public_genomic_data are comparing it to the libraries listed below

• zhxiaokang / RASflow
  RNA-Seq analysis workflow
  ☆104Updated 4 years ago
• hbctraining / DGE_workshop_salmon
  ☆72Updated 3 years ago
• hbctraining / main
  ☆54Updated last week
• iDEP-SDSU / idep
  Integrated Differential Expression and Pathway analysis
  ☆132Updated 2 weeks ago
• slowkow / snakefiles
  Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).
  ☆93Updated 8 years ago
• tavareshugo / tutorial_DESeq2_contrasts
  ☆62Updated last year
• h3abionet / h3agwas
  GWAS Pipeline for H3Africa
  ☆111Updated 2 months ago
• raerose01 / deconstructSigs
  deconstructSigs
  ☆142Updated 2 years ago
• simonvh / bioinfosummer
  Tutorial for AMSI BioInfoSummer 2018
  ☆29Updated 6 years ago
• tobiasrausch / ATACseq
  Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
  ☆74Updated 2 years ago
• crazyhottommy / pyflow-ATACseq
  ATAC-seq snakemake pipeline
  ☆89Updated 5 years ago
• kvittingseerup / IsoformSwitchAnalyzeR
  An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
  ☆116Updated 6 months ago
• bcgsc / mirna
  microRNA profiling pipeline
  ☆79Updated 3 years ago
• PMBio / peer
  A factor analysis package
  ☆100Updated 13 years ago
• davetang / learning_vcf_file
  Learning the Variant Call Format
  ☆142Updated this week
• PoisonAlien / trackplot
  Generate IGV style locus tracks from bigWig files in R
  ☆167Updated 9 months ago
• signalbash / how_are_we_stranded_here
  Check strandedness of RNA-Seq fastq files
  ☆125Updated 2 years ago
• csoneson / ARMOR
  Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
  ☆165Updated 8 months ago
• reimandlab / ActivePathways
  Integrative pathway enrichment analysis of multivariate omics data
  ☆113Updated 3 weeks ago
• thelovelab / rnaseqGene
  RNA-seq workflow: exploratory analysis and differential expression
  ☆78Updated last year
• quinlan-lab / sllobs-biostats
  ☆72Updated 3 years ago
• davidaknowles / leafcutter
  Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …
  ☆222Updated last year
• ENCODE-DCC / long-rna-seq-pipeline
  STAR based ENCODE Long RNA-Seq processing pipeline
  ☆95Updated 4 years ago
• LiuLabUB / HMMRATAC
  HMMRATAC peak caller for ATAC-seq data
  ☆99Updated 8 months ago
• jsh58 / Genrich
  Detecting sites of genomic enrichment
  ☆192Updated 2 years ago
• bli25 / RSEM_tutorial
  A short tutorial on how to use RSEM
  ☆137Updated 5 years ago
• broadinstitute / 2020_scWorkshop
  Code and data repository for the 2020 physalia course on single cell RNA sequencing.
  ☆58Updated 5 years ago
• hamidghaedi / Enrichment-Analysis
  From RNA-seq raw reads to enriched pathways by DEGs
  ☆32Updated last year
• kundajelab / phantompeakqualtools
  This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…
  ☆59Updated 5 years ago
• snakemake-workflows / rna-seq-kallisto-sleuth
  A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
  ☆68Updated this week