Alternatives and similar repositories for Accessing_public_genomic_data

Users that are interested in Accessing_public_genomic_data are comparing it to the libraries listed below

• zhxiaokang / RASflow
  RNA-Seq analysis workflow
  ☆105Updated 4 years ago
• PoisonAlien / trackplot
  Generate IGV style locus tracks from bigWig files in R
  ☆175Updated last year
• im3sanger / dndscv
  dN/dS methods to quantify selection in cancer and somatic evolution
  ☆230Updated 8 months ago
• broadinstitute / 2020_scWorkshop
  Code and data repository for the 2020 physalia course on single cell RNA sequencing.
  ☆59Updated 5 years ago
• kvittingseerup / IsoformSwitchAnalyzeR
  An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
  ☆121Updated last month
• tavareshugo / tutorial_DESeq2_contrasts
  ☆65Updated last year
• raerose01 / deconstructSigs
  deconstructSigs
  ☆144Updated 2 years ago
• griffithlab / rnabio.org
  website for the rnaseq course
  ☆115Updated last month
• bli25 / RSEM_tutorial
  A short tutorial on how to use RSEM
  ☆139Updated 5 years ago
• snakemake-workflows / single-cell-rna-seq
  A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.
  ☆105Updated 3 years ago
• LiuLabUB / HMMRATAC
  HMMRATAC peak caller for ATAC-seq data
  ☆98Updated last year
• crazyhottommy / pyflow-ATACseq
  ATAC-seq snakemake pipeline
  ☆88Updated 5 years ago
• tobiasrausch / ATACseq
  Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
  ☆75Updated 2 years ago
• FredHutch / SEACR
  SEACR: Sparse Enrichment Analysis for CUT&RUN
  ☆120Updated 3 years ago
• slowkow / snakefiles
  Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).
  ☆94Updated 8 years ago
• jsh58 / Genrich
  Detecting sites of genomic enrichment
  ☆198Updated 2 years ago
• hbctraining / DGE_workshop_salmon
  ☆73Updated 4 years ago
• hbctraining / main
  ☆57Updated this week
• bcgsc / mirna
  microRNA profiling pipeline
  ☆80Updated 4 years ago
• crazyhottommy / pyflow-ChIPseq
  a snakemake pipeline to process ChIP-seq files from GEO or in-house
  ☆127Updated 2 weeks ago
• davetang / learning_vcf_file
  Learning the Variant Call Format
  ☆147Updated 5 months ago
• csoneson / ARMOR
  Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
  ☆165Updated 3 months ago
• nloyfer / wgbs_tools
  tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
  ☆178Updated last month
• quinlan-lab / sllobs-biostats
  ☆73Updated 3 years ago
• ParkerLab / ataqv
  A toolkit for QC and visualization of ATAC-seq results.
  ☆72Updated last year
• dzhang32 / ggtranscript
  Visualizing transcript structure and annotation using ggplot2
  ☆165Updated last year
• kevinblighe / E-MTAB-6141
  Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
  ☆122Updated 5 years ago
• ENCODE-DCC / long-rna-seq-pipeline
  STAR based ENCODE Long RNA-Seq processing pipeline
  ☆96Updated 4 years ago
• h3abionet / h3agwas
  GWAS Pipeline for H3Africa
  ☆114Updated 7 months ago
• simonvh / bioinfosummer
  Tutorial for AMSI BioInfoSummer 2018
  ☆29Updated 7 years ago