hbctraining / bioinformatics_online
Resource list and preparation instructions for online learning and teaching for Bioinformatics
☆19Updated last year
Related projects ⓘ
Alternatives and complementary repositories for bioinformatics_online
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated last year
- Tutorials on accessing public reference and genomic data☆29Updated 2 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆75Updated 2 years ago
- ☆115Updated last year
- From RNA-seq raw reads to enriched pathways by DEGs☆31Updated 6 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 3 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆35Updated 6 years ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆61Updated 3 years ago
- Code and data repository for the 2020 physalia course on single cell RNA sequencing.☆56Updated 4 years ago
- Analysis pipeline for ATAC-seq Data☆60Updated 3 years ago
- Estimate locus specific human LINE-1 expression.☆32Updated 2 years ago
- ☆59Updated last year
- A toolkit for QC and visualization of ATAC-seq results.☆66Updated last month
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated last year
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆67Updated last month
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆99Updated 2 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆88Updated last year
- microRNA profiling pipeline☆73Updated 2 years ago
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…☆26Updated 3 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆93Updated 3 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆101Updated 3 months ago
- ☆103Updated last year
- Publication quality NGS track plotting☆108Updated 2 years ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆103Updated 4 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated last week
- A continually expanding collection of cancer genomics notes and data☆102Updated 3 weeks ago
- Repository for Cibersortx☆51Updated 3 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆57Updated last month
- ☆64Updated last year
- Tutorial Website☆53Updated 3 years ago