A curated list of awesome cytodata resources
☆88Nov 15, 2023Updated 2 years ago
Alternatives and similar repositories for awesome-cytodata
Users that are interested in awesome-cytodata are comparing it to the libraries listed below
Sorting:
- Awesome list of computational biology.☆120Mar 2, 2026Updated last week
- A list of web-based interactive biological data visualizations.☆223Apr 2, 2024Updated last year
- A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.☆176Jan 27, 2026Updated last month
- Python package for processing image-based profiling data☆134Updated this week
- A flexible Julia toolkit for high-dimensional cellular profiles☆13Jul 14, 2023Updated 2 years ago
- Ideas, code and results of the 2018 CytoData hackathon☆13Jan 23, 2024Updated 2 years ago
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆22Dec 3, 2021Updated 4 years ago
- Gamified image segmentation quality estimation☆19May 1, 2025Updated 10 months ago
- Find profile pairs and compute retrieval metrics between them.☆22Mar 1, 2026Updated last week
- Predicting Cell Health with Morphological Profiles☆39Jan 26, 2022Updated 4 years ago
- Single cell Morphology Quality Control (coSMicQC)☆10Updated this week
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆13Feb 17, 2026Updated 2 weeks ago
- Visualizing feature measurements on label images in napari☆10Jul 24, 2024Updated last year
- Interface to the Bioformats Java library☆13Feb 17, 2026Updated 2 weeks ago
- Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.☆17Mar 1, 2026Updated last week
- Morphological profiling using deep learning☆123Oct 19, 2024Updated last year
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Oct 8, 2025Updated 5 months ago
- ☆12Dec 23, 2020Updated 5 years ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Feb 12, 2026Updated 3 weeks ago
- ☆34Feb 13, 2026Updated 3 weeks ago
- Predicting assays Using Morphological Analysis☆14May 24, 2024Updated last year
- ☆72Feb 14, 2025Updated last year
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆108Mar 2, 2026Updated last week
- Images and other data from the JUMP Cell Painting Consortium☆182Mar 2, 2026Updated last week
- OMERO.server production docker image☆16Feb 16, 2026Updated 3 weeks ago
- ☆16Apr 10, 2019Updated 6 years ago
- A package that provides data analysis pipeline for flow cytometry.☆81Aug 26, 2025Updated 6 months ago
- Package providing bioimaging functionality using TileDB. Source of the tiledb-bioimg Python package.☆18Dec 17, 2025Updated 2 months ago
- Map of Open Source Science☆47Jul 27, 2025Updated 7 months ago
- Anatomogram illustrating Expression Atlas experiments☆50Jul 30, 2020Updated 5 years ago
- A curated list of Cheminformatics libraries and software.☆840Mar 15, 2024Updated last year
- A large-scale pretraining dataset for bioimage transfer learning☆16Jul 31, 2022Updated 3 years ago
- The Synthetic Biology Open Language (SBOL)☆23Apr 25, 2023Updated 2 years ago
- Registries for biological ontologies.☆24Updated this week
- Lists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays☆25Jan 3, 2025Updated last year
- Share Apache Arrow datasets between Python and R.☆18Updated this week
- Efficient cell detection in large images using cellfinder in napari☆22Jan 5, 2024Updated 2 years ago
- comparing drug classification methods☆22Feb 8, 2020Updated 6 years ago
- 🍊🔬 Bioinformatics add-on for Orange3☆24Feb 17, 2026Updated 2 weeks ago