cytodata / awesome-cytodata
A curated list of awesome cytodata resources
☆81Updated last year
Alternatives and similar repositories for awesome-cytodata:
Users that are interested in awesome-cytodata are comparing it to the libraries listed below
- A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.☆135Updated 4 months ago
- Methods for Image-Based Cell Profiling☆49Updated 9 months ago
- A list of web-based interactive biological data visualizations.☆185Updated 10 months ago
- Community-contributed and experimental CellProfiler modules.☆63Updated 2 weeks ago
- Awesome list of computational biology.☆82Updated 3 months ago
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆20Updated 3 years ago
- Python package for processing image-based profiling data☆87Updated 2 weeks ago
- Morphological profiling using deep learning☆112Updated 3 months ago
- Predicting Cell Health with Morphological Profiles☆35Updated 3 years ago
- Bio-Formats image file format to raw format converter☆85Updated last week
- CellProfiler tutorial pipelines and images☆89Updated 3 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆34Updated last year
- Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.☆40Updated 2 weeks ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆97Updated 2 years ago
- Spatial Single-Cell Analysis Toolkit☆85Updated 3 weeks ago
- Subpopulation detection in high-dimensional single-cell data☆68Updated 4 years ago
- Microscopy Image Cytometry Toolkit☆116Updated 2 years ago
- Jupyter notebooks for CellProfiler and friends☆12Updated 6 years ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆75Updated 5 months ago
- Raw format to OME-TIFF converter☆49Updated last week
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆28Updated 2 weeks ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆53Updated 4 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 8 months ago
- Spatial Single Cell Analysis in Python☆464Updated this week
- Multiple-choice microscopy pipeline☆120Updated 2 weeks ago
- A pixel classification based multiplexed image segmentation pipeline☆87Updated last year
- ☆64Updated 2 years ago
- Toolbox for the analysis of smFISH images.☆58Updated last year
- A toolkit for processing multiplexed tissue images☆54Updated last week
- Integrated pipeline for multiplexed image analysis☆80Updated 3 months ago