A curated list of awesome cytodata resources
☆90Nov 15, 2023Updated 2 years ago
Alternatives and similar repositories for awesome-cytodata
Users that are interested in awesome-cytodata are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Awesome list of computational biology.☆129Apr 29, 2026Updated last week
- Ideas, code and results of the 2018 CytoData hackathon☆13Jan 23, 2024Updated 2 years ago
- A flexible Julia toolkit for high-dimensional cellular profiles☆13Jul 14, 2023Updated 2 years ago
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆22Dec 3, 2021Updated 4 years ago
- Gamified image segmentation quality estimation☆19May 1, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.☆182Mar 14, 2026Updated last month
- Python package for processing image-based profiling data☆137May 1, 2026Updated last week
- Find profile pairs and compute retrieval metrics between them.☆22Apr 3, 2026Updated last month
- Single cell Morphology Quality Control (coSMicQC)☆11Apr 27, 2026Updated last week
- UMM-Discovery is a fully unsupervised deep learning method to cluster cellular images with similar phenotypes together, solely based on t…☆11Nov 4, 2020Updated 5 years ago
- Visualizing feature measurements on label images in napari☆10Jul 24, 2024Updated last year
- Predicting assays Using Morphological Analysis☆14May 24, 2024Updated last year
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Oct 8, 2025Updated 7 months ago
- Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.☆19Updated this week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆12Dec 23, 2020Updated 5 years ago
- Predicting Cell Health with Morphological Profiles☆40Jan 26, 2022Updated 4 years ago
- CellProfiler plugins for multiplexed image analysis☆12Feb 16, 2021Updated 5 years ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆173Updated this week
- Label Free Prediction of Cell Painting from Brightfield Images☆34Jul 7, 2022Updated 3 years ago
- AICS ML Segmentation (One-Way) Mirror☆28May 2, 2021Updated 5 years ago
- ☆72Feb 14, 2025Updated last year
- Applying deep learning for very early recognition of pluripotent stem cell differentiation☆11Mar 15, 2019Updated 7 years ago
- Morphological profiling using deep learning☆125Oct 19, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆99Feb 17, 2023Updated 3 years ago
- Registry for scverse ecosystem packages☆37Updated this week
- A large-scale pretraining dataset for bioimage transfer learning☆16Jul 31, 2022Updated 3 years ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆108May 1, 2026Updated last week
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Sep 14, 2020Updated 5 years ago
- comparing drug classification methods☆21Feb 8, 2020Updated 6 years ago
- Spatial Single-Cell Analysis Toolkit☆111Mar 11, 2026Updated last month
- ☆24Aug 27, 2020Updated 5 years ago
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆13Apr 30, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Images and other data from the JUMP Cell Painting Consortium☆185Apr 27, 2026Updated last week
- Just some light reading.☆21Jan 22, 2020Updated 6 years ago
- An implementation of the Zarr storage format specification for chunked & compressed multidimensional arrays.☆25Apr 22, 2025Updated last year
- An open-source application for biological image analysis☆1,117Updated this week
- StarDist plugin for ImageJ☆31May 9, 2022Updated 4 years ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆32Apr 9, 2026Updated last month
- An R package for conducting co-localization analysis. Edit☆26Jan 4, 2020Updated 6 years ago