Non-comprehensive list of projects and resources related to open microscopy.
☆178Jun 1, 2026Updated last week
Alternatives and similar repositories for OpenMicroscopy
Users that are interested in OpenMicroscopy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of mu…☆86Updated this week
- How to build a simple alignment laser for typical optical alignment tasks.☆17Apr 16, 2026Updated last month
- ☆21Apr 28, 2026Updated last month
- Recipes for open microscopy☆13Dec 7, 2020Updated 5 years ago
- Blueprints for a low-cost laser combiner compatible with wide-field and localization microscopy.☆56Jul 24, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- This repository is for the openFrame microscope and supporting projects☆15May 18, 2026Updated 3 weeks ago
- A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.☆186Mar 14, 2026Updated 2 months ago
- A Micro-Manager plugin that loads easily reconfigurable user interfaces.☆11Aug 30, 2023Updated 2 years ago
- Design and documentation for the 2p microscope.☆17Feb 20, 2025Updated last year
- Python control of micro-manager for customized data acquisition☆183Mar 13, 2026Updated 2 months ago
- ☆18Jan 13, 2025Updated last year
- A collection of 3D image processing functions and applications with GPU implementation☆14Feb 26, 2021Updated 5 years ago
- Workshop materials for "Images to Knowledge with ImageJ and Friends" 2020 conference☆13Apr 26, 2022Updated 4 years ago
- A package for processing diSPIM images with GPU implementation☆14Dec 10, 2021Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Respository for Open-Science modular microscope system.☆530May 22, 2025Updated last year
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆17Nov 10, 2022Updated 3 years ago
- Fusing image tiles with dask array's map_blocks☆31Feb 27, 2024Updated 2 years ago
- Microscope control and image acquisition integrated with ImageJ☆305Updated this week
- Code and data belonging to "Raw data to results: a hands-on introduction and overview of computational analysis for single-molecule local…☆11Mar 7, 2022Updated 4 years ago
- GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets☆76Jun 1, 2026Updated last week
- A napari Plugin for visualisaton of pixel values over time (t+ nD) as graphs.☆14Apr 24, 2024Updated 2 years ago
- Python bindings for scalar and vectorial models of the 3D microscope point spread function.☆56May 20, 2024Updated 2 years ago
- ☆14Jan 26, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A python toolkit for fluorescence microscopy.☆22May 19, 2026Updated 3 weeks ago
- User-affordable and versatile light-sheet microscopy system for cleared specimens☆28Mar 14, 2025Updated last year
- Simple Maven project for an ImageJ2 command☆34Apr 11, 2022Updated 4 years ago
- code of the registration and deconvolution project☆36Jun 10, 2021Updated 5 years ago
- A hub to start the next generation of Microscope Control Software☆60Jan 7, 2021Updated 5 years ago
- C and NVidia CUDA code for multi-view deconvolution☆12Jul 25, 2016Updated 9 years ago
- Master repository that documents how the different parts come together of the open source hardware Fluorescence Activated (Microfluidic) …☆15Dec 8, 2025Updated 6 months ago
- ☆19Feb 27, 2020Updated 6 years ago
- Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…☆166May 22, 2026Updated 2 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆24May 16, 2023Updated 3 years ago
- Deep Learning segmentation suite designed for 2D microscopy image segmentation☆10Dec 17, 2021Updated 4 years ago
- Generates simulated confocal data from a ground truth signal☆11Aug 16, 2022Updated 3 years ago
- Config and scripts used to run a Nikon Eclipse Ti in the vanNimwegen lab.☆22Jul 8, 2024Updated last year
- Hardware documentation for mesoSPIM-Bechtop microscope project☆30May 11, 2026Updated last month
- An ImageJ script to align and stitch three-dimensional tiles and quickly explore terabyte-sized microscopy datasets☆13Feb 22, 2022Updated 4 years ago
- Shell scripts for scientific projects written in Java☆17May 4, 2026Updated last month