Non-comprehensive list of projects and resources related to open microscopy.
☆177Mar 19, 2026Updated 3 weeks ago
Alternatives and similar repositories for OpenMicroscopy
Users that are interested in OpenMicroscopy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of mu…☆85Mar 26, 2026Updated 2 weeks ago
- How to build a simple alignment laser for typical optical alignment tasks.☆17Dec 9, 2024Updated last year
- ☆21Mar 11, 2026Updated 3 weeks ago
- Recipes for open microscopy☆12Dec 7, 2020Updated 5 years ago
- Blueprints for a low-cost laser combiner compatible with wide-field and localization microscopy.☆56Jul 24, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- This repository is for the openFrame microscope and supporting projects☆13Mar 16, 2026Updated 3 weeks ago
- A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.☆177Mar 14, 2026Updated 3 weeks ago
- A Micro-Manager plugin that loads easily reconfigurable user interfaces.☆11Aug 30, 2023Updated 2 years ago
- Design and documentation for the 2p microscope.☆17Feb 20, 2025Updated last year
- Python control of micro-manager for customized data acquisition☆179Mar 13, 2026Updated 3 weeks ago
- ☆17Jan 13, 2025Updated last year
- Workshop materials for "Images to Knowledge with ImageJ and Friends" 2020 conference☆13Apr 26, 2022Updated 3 years ago
- A collection of 3D image processing functions and applications with GPU implementation☆14Feb 26, 2021Updated 5 years ago
- A package for processing diSPIM images with GPU implementation☆14Dec 10, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Respository for Open-Science modular microscope system.☆524May 22, 2025Updated 10 months ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆17Nov 10, 2022Updated 3 years ago
- Fusing image tiles with dask array's map_blocks☆31Feb 27, 2024Updated 2 years ago
- Microscope control and image acquisition integrated with ImageJ☆302Updated this week
- Code and data belonging to "Raw data to results: a hands-on introduction and overview of computational analysis for single-molecule local…☆11Mar 7, 2022Updated 4 years ago
- GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets☆76Apr 1, 2026Updated last week
- A napari Plugin for visualisaton of pixel values over time (t+ nD) as graphs.☆13Apr 24, 2024Updated last year
- Python bindings for scalar and vectorial models of the 3D microscope point spread function.☆54May 20, 2024Updated last year
- ☆14Jan 26, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A python toolkit for fluorescence microscopy.☆22Dec 17, 2025Updated 3 months ago
- User-affordable and versatile light-sheet microscopy system for cleared specimens☆28Mar 14, 2025Updated last year
- Simple Maven project for an ImageJ2 command☆34Apr 11, 2022Updated 3 years ago
- code of the registration and deconvolution project☆36Jun 10, 2021Updated 4 years ago
- A hub to start the next generation of Microscope Control Software☆60Jan 7, 2021Updated 5 years ago
- C and NVidia CUDA code for multi-view deconvolution☆12Jul 25, 2016Updated 9 years ago
- Master repository that documents how the different parts come together of the open source hardware Fluorescence Activated (Microfluidic) …☆15Dec 8, 2025Updated 4 months ago
- ☆19Feb 27, 2020Updated 6 years ago
- Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…☆163Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆25May 16, 2023Updated 2 years ago
- Deep Learning segmentation suite designed for 2D microscopy image segmentation☆10Dec 17, 2021Updated 4 years ago
- Generates simulated confocal data from a ground truth signal☆11Aug 16, 2022Updated 3 years ago
- Config and scripts used to run a Nikon Eclipse Ti in the vanNimwegen lab.☆22Jul 8, 2024Updated last year
- Hardware documentation for mesoSPIM-Bechtop microscope project☆27Mar 17, 2026Updated 3 weeks ago
- An ImageJ script to align and stitch three-dimensional tiles and quickly explore terabyte-sized microscopy datasets☆13Feb 22, 2022Updated 4 years ago
- Shell scripts for scientific projects written in Java☆17Nov 26, 2025Updated 4 months ago