Non-comprehensive list of projects and resources related to open microscopy.
☆187Jul 23, 2026Updated last month
Alternatives and similar repositories for OpenMicroscopy
Users that are interested in OpenMicroscopy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of mu…☆88Jul 10, 2026Updated last month
- Master repository that documents how the different parts come together of the open source hardware Fluorescence Activated (Microfluidic) …☆15Dec 8, 2025Updated 8 months ago
- Python control of micro-manager for customized data acquisition☆187Jun 17, 2026Updated 2 months ago
- Fusing image tiles with dask array's map_blocks☆31Feb 27, 2024Updated 2 years ago
- A hub to start the next generation of Microscope Control Software☆60Jan 7, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Blueprints for a low-cost laser combiner compatible with wide-field and localization microscopy.☆56Jul 24, 2020Updated 6 years ago
- ☆21Updated this week
- PSFj - Know your microscope fluorescence☆24Mar 6, 2020Updated 6 years ago
- ☆18Jan 13, 2025Updated last year
- A place to collect information used in lectures, demos, workshops, etc.☆17Sep 26, 2024Updated last year
- How to build a simple alignment laser for typical optical alignment tasks.☆18Apr 16, 2026Updated 4 months ago
- A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.☆193Mar 14, 2026Updated 5 months ago
- Code and data belonging to "Raw data to results: a hands-on introduction and overview of computational analysis for single-molecule local…☆11Mar 7, 2022Updated 4 years ago
- A python toolkit for fluorescence microscopy.☆22Aug 18, 2026Updated last week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- An open-source tool for characterizing PSF and FWHM measurements from light-microscopic 2D and 3D images of microspheres.☆19Aug 13, 2026Updated 2 weeks ago
- Denoising via adaptive binning.☆14Updated this week
- Respository for Open-Science modular microscope system.☆531Aug 9, 2026Updated 3 weeks ago
- Particle tracking by solving linear assignment problem.☆69Jul 30, 2026Updated last month
- Python bindings for scalar and vectorial models of the 3D microscope point spread function.☆59May 20, 2024Updated 2 years ago
- ☆52May 1, 2025Updated last year
- This repository is for the openFrame microscope and supporting projects☆17Aug 5, 2026Updated 3 weeks ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Jun 5, 2024Updated 2 years ago
- Workshop materials for "Images to Knowledge with ImageJ and Friends" 2020 conference☆13Apr 26, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- User-affordable and versatile light-sheet microscopy system for cleared specimens☆29Mar 14, 2025Updated last year
- ☆20May 1, 2025Updated last year
- Dataset EXploration & Processing☆33May 11, 2023Updated 3 years ago
- ☆24Sep 13, 2025Updated 11 months ago
- ☆14Jan 25, 2024Updated 2 years ago
- Loading and handling microscopy data in blender☆160Updated this week
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆16Updated this week
- Imagej toolset to ease hyperstacks visualization and handling☆23Feb 9, 2026Updated 6 months ago
- Illustrations created by Henning Falk for the Zarr community☆49Jan 29, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆184Jul 30, 2026Updated last month
- ☆24May 16, 2023Updated 3 years ago
- Microscope control and image acquisition integrated with ImageJ☆319Updated this week
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆136Apr 9, 2020Updated 6 years ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆18Nov 10, 2022Updated 3 years ago
- A collection of 3D image processing functions and applications with GPU implementation☆14Feb 26, 2021Updated 5 years ago
- A napari Plugin for visualisaton of pixel values over time (t+ nD) as graphs.☆14Apr 24, 2024Updated 2 years ago