Non-comprehensive list of projects and resources related to open microscopy.
☆185Jul 23, 2026Updated 2 weeks ago
Alternatives and similar repositories for OpenMicroscopy
Users that are interested in OpenMicroscopy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of mu…☆87Jul 10, 2026Updated last month
- Master repository that documents how the different parts come together of the open source hardware Fluorescence Activated (Microfluidic) …☆15Dec 8, 2025Updated 8 months ago
- Python control of micro-manager for customized data acquisition☆186Jun 17, 2026Updated last month
- Fusing image tiles with dask array's map_blocks☆31Feb 27, 2024Updated 2 years ago
- A hub to start the next generation of Microscope Control Software☆60Jan 7, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Blueprints for a low-cost laser combiner compatible with wide-field and localization microscopy.☆56Jul 24, 2020Updated 6 years ago
- ☆21Updated this week
- PSFj - Know your microscope fluorescence☆24Mar 6, 2020Updated 6 years ago
- ☆18Jan 13, 2025Updated last year
- A place to collect information used in lectures, demos, workshops, etc.☆17Sep 26, 2024Updated last year
- How to build a simple alignment laser for typical optical alignment tasks.☆17Apr 16, 2026Updated 3 months ago
- A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.☆190Mar 14, 2026Updated 4 months ago
- Code and data belonging to "Raw data to results: a hands-on introduction and overview of computational analysis for single-molecule local…☆11Mar 7, 2022Updated 4 years ago
- A python toolkit for fluorescence microscopy.☆22Jul 31, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An open-source tool for characterizing PSF and FWHM measurements from light-microscopic 2D and 3D images of microspheres.☆18Jun 12, 2026Updated last month
- Denoising via adaptive binning.☆14Jan 6, 2026Updated 7 months ago
- Respository for Open-Science modular microscope system.☆529May 22, 2025Updated last year
- Particle tracking by solving linear assignment problem.☆67Jul 30, 2026Updated last week
- Python bindings for scalar and vectorial models of the 3D microscope point spread function.☆59May 20, 2024Updated 2 years ago
- ☆52May 1, 2025Updated last year
- This repository is for the openFrame microscope and supporting projects☆16Updated this week
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Jun 5, 2024Updated 2 years ago
- Workshop materials for "Images to Knowledge with ImageJ and Friends" 2020 conference☆13Apr 26, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- User-affordable and versatile light-sheet microscopy system for cleared specimens☆29Mar 14, 2025Updated last year
- ☆20May 1, 2025Updated last year
- Dataset EXploration & Processing☆33May 11, 2023Updated 3 years ago
- ☆24Sep 13, 2025Updated 10 months ago
- ☆14Jan 25, 2024Updated 2 years ago
- Loading and handling microscopy data in blender☆159Jul 15, 2026Updated 3 weeks ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆15Jul 30, 2026Updated last week
- Imagej toolset to ease hyperstacks visualization and handling☆23Feb 9, 2026Updated 6 months ago
- Real-time feedback control microscopy for automation of optogenetic targeting☆16Jul 13, 2026Updated 3 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Illustrations created by Henning Falk for the Zarr community☆48Jan 29, 2025Updated last year
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆183Jul 30, 2026Updated last week
- ☆24May 16, 2023Updated 3 years ago
- Microscope control and image acquisition integrated with ImageJ☆316Updated this week
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆136Apr 9, 2020Updated 6 years ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆18Nov 10, 2022Updated 3 years ago
- A collection of 3D image processing functions and applications with GPU implementation☆14Feb 26, 2021Updated 5 years ago