VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
☆106Jul 9, 2026Updated last week
Alternatives and similar repositories for VerifyBamID
Users that are interested in VerifyBamID are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Concordance and contamination estimator for tumor–normal pairs☆60Oct 22, 2024Updated last year
- Somatic copy variant caller (CNV) for next generation sequencing☆78Sep 12, 2024Updated last year
- Tools for early stage alignment file processing☆96Mar 12, 2019Updated 7 years ago
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆329Updated this week
- Software program for checking sample matching for NGS data☆142Jun 20, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A tool for sample swap identification in high throughput sequencing studies☆10Mar 4, 2025Updated last year
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- Copy number calling and variant classification using targeted short read sequencing☆149Feb 19, 2026Updated 5 months ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆17Jun 14, 2023Updated 3 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Jun 30, 2020Updated 6 years ago
- Graph realignment tools for structural variants☆168Dec 8, 2022Updated 3 years ago
- Tools for working with genomic and high throughput sequencing data.☆370May 20, 2026Updated 2 months ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆177Aug 22, 2024Updated last year
- ☆82Nov 30, 2018Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆28Mar 15, 2017Updated 9 years ago
- A fast lossless FASTQ compressor with ultra-high compression ratio☆152May 28, 2025Updated last year
- Annotation and Ranking of Structural Variation☆304Jun 19, 2026Updated last month
- Utility functions for FACETS☆40Oct 24, 2025Updated 8 months ago
- lumpy: a general probabilistic framework for structural variant discovery☆344Feb 22, 2026Updated 5 months ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆134Jan 6, 2021Updated 5 years ago
- ☆13Jul 17, 2024Updated 2 years ago
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆227Sep 18, 2025Updated 10 months ago
- ☆127Sep 5, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fast HLA type inference from whole-genome data☆146Apr 3, 2025Updated last year
- ☆69Jun 21, 2022Updated 4 years ago
- TREDPARSE: HLI Short Tandem Repeat (STR) caller☆25Aug 20, 2020Updated 5 years ago
- Benchmark structural variant calls against a reference set☆18Jan 26, 2026Updated 5 months ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆95Jun 29, 2026Updated 3 weeks ago
- VarDict☆204Jan 5, 2024Updated 2 years ago
- Gene fusion detection and visualization☆132Feb 21, 2022Updated 4 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Feb 17, 2022Updated 4 years ago
- Deep learning-based structural variant filtering method☆40Nov 19, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Structural variant and indel caller for mapped sequencing data☆468Oct 11, 2025Updated 9 months ago
- A read extraction and realignment tool for next generation sequencing data☆108Oct 29, 2022Updated 3 years ago
- A standalone end-to-end data analysis pipeline for Duplex Sequencing☆23Oct 25, 2023Updated 2 years ago
- Bayesian genotyper for structural variants☆136Apr 13, 2026Updated 3 months ago
- Generate duplex/single consensus reads to reduce sequencing noises and remove duplications☆127Oct 27, 2023Updated 2 years ago
- Python library to parse, format, validate, normalize, and map sequence variants according to HGVS Nomenclature (https://hgvs-nomenclature…☆291Updated this week
- Query Mutated Reads from a Bam☆26Nov 26, 2018Updated 7 years ago