hakyimlab / phenomexcan
PhenomeXcan: mapping the genome to the phenome through the transcriptome
☆11Updated 4 years ago
Alternatives and similar repositories for phenomexcan:
Users that are interested in phenomexcan are comparing it to the libraries listed below
- ☆17Updated 3 years ago
- Multi-Omic Strategies for TWAS☆12Updated last year
- Benchmarking gene and variant prioritization algorithms for GWAS data☆15Updated 5 years ago
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Updated 5 years ago
- Sample code for ldsc analyses in UKBB☆30Updated last year
- A rapido and lightweight method for PGS computation☆13Updated 3 weeks ago
- Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).☆13Updated 2 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆17Updated 2 years ago
- ☆16Updated last year
- ☆13Updated last year
- This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3☆12Updated 5 years ago
- Estimate genetic correlation using predicted expression☆21Updated 7 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆21Updated 4 years ago
- Create LocusZoom-style plots in R.☆21Updated 2 years ago
- metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using u…☆19Updated 3 years ago
- Format of GWAS summary statistics.☆12Updated 7 months ago
- ☆11Updated 2 years ago
- An R package for generating comparative regional association plots☆18Updated 2 months ago
- PredictDB Pipeline for GTEx v7 data☆17Updated 2 years ago
- cEll tyPe enrIChment☆14Updated 2 years ago
- LOGODetect is a powerful tool to identify small segments that harbor local genetic correlation between two traits/diseases.☆27Updated last year
- RSS-NET: Regression with Summary Statistics exploiting Network Topology☆18Updated 5 months ago
- Fine-mapping with infinitesimal effects☆14Updated 11 months ago
- Code supporting analyses in paper on fine-mapping AD loci☆15Updated 3 years ago
- Pan cancer summary statistics from meta analyses of UK Biobank and Kaiser GERA cohorts.☆15Updated 4 years ago
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆18Updated 2 years ago
- haploR: utilities for mining Haploreg and other similar web-based tools☆9Updated 11 months ago
- GWAS gold standards repository☆32Updated last year
- Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)☆23Updated 5 years ago
- Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis☆17Updated 4 months ago