hakyimlab / phenomexcanLinks
PhenomeXcan: mapping the genome to the phenome through the transcriptome
☆11Updated 5 years ago
Alternatives and similar repositories for phenomexcan
Users that are interested in phenomexcan are comparing it to the libraries listed below
Sorting:
- ☆18Updated 2 years ago
- This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3☆13Updated 6 years ago
- Multi-Omic Strategies for TWAS☆13Updated 2 years ago
- Analysis pipelines for QTL discovery and GWAS signals interpretation☆12Updated last year
- ☆20Updated last year
- Sample code for ldsc analyses in UKBB☆31Updated 2 years ago
- Benchmarking gene and variant prioritization algorithms for GWAS data☆15Updated 5 years ago
- ☆15Updated last year
- Heritability, genetic correlation and functional enrichment estimation for case-control studies☆19Updated last year
- Fine-mapping with infinitesimal effects☆20Updated 5 months ago
- An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests☆13Updated 5 months ago
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆20Updated 3 months ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Updated 3 years ago
- PredictDB Pipeline for GTEx v7 data☆16Updated 3 years ago
- ☆18Updated 4 years ago
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Updated 6 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Updated 5 years ago
- An R package for generating comparative regional association plots☆18Updated last month
- Transcriptome-wide association study of Major Depressive Disorder☆12Updated 5 years ago
- R package for processing of GWAS output☆16Updated last year
- ☆25Updated last month
- An R package for plotting GWAS results from the GAPIT package☆14Updated last month
- BioCarta pathway images☆11Updated 2 years ago
- ☆11Updated 3 years ago
- ☆12Updated 3 years ago
- cEll tyPe enrIChment☆15Updated 2 years ago
- Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis☆18Updated 8 months ago
- This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…☆11Updated last year
- RNA-seq analysis scripts☆15Updated 2 weeks ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Updated last month