☆21Sep 1, 2022Updated 3 years ago
Alternatives and similar repositories for CCGWAS
Users that are interested in CCGWAS are comparing it to the libraries listed below
Sorting:
- Benchmarking gene and variant prioritization algorithms for GWAS data☆15Feb 27, 2020Updated 6 years ago
- ☆22Updated this week
- ☆38Jan 20, 2021Updated 5 years ago
- ☆27Aug 20, 2020Updated 5 years ago
- An R package for performing MultiSTAAR procedure in whole-genome sequencing studies☆11Nov 14, 2024Updated last year
- A GWAS fine-mapping pipeline used in CAUSALdb☆27May 1, 2022Updated 3 years ago
- SMR-Portal: an online platform for integrative analysis of GWAS and xQTL data to identify complex trait genes.☆21Dec 2, 2025Updated 3 months ago
- Fast manhattenplots using ggplot2☆13Feb 19, 2024Updated 2 years ago
- Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis☆16Dec 1, 2025Updated 3 months ago
- Pariwise analysis of GWAS☆46Sep 27, 2018Updated 7 years ago
- Fine-tuning polygenic risk score models using GWAS summary statistics☆54Oct 19, 2025Updated 4 months ago
- A tool to plot significant regions of GWAS☆29Jan 27, 2023Updated 3 years ago
- ☆30Oct 18, 2021Updated 4 years ago
- ☆92Jul 21, 2025Updated 7 months ago
- Code and simulations using interaction-LD score regression☆13Jul 2, 2024Updated last year
- Cross-population polygenic prediction☆101Nov 13, 2025Updated 3 months ago
- Gaussian imputation of GWAS summary statistics☆15Apr 16, 2015Updated 10 years ago
- Software to infer latent pleiotropic components from GWAS summary data☆15Jan 30, 2025Updated last year
- Data and code for the Effector index☆14Oct 13, 2020Updated 5 years ago
- R package for CAUSE☆56Dec 29, 2023Updated 2 years ago
- A collection of commonly used formats for quick lookup.☆14Jan 12, 2026Updated last month
- single-cell Contamination Detection and Correction☆17Jan 15, 2025Updated last year
- The gsmr R-package implements the GSMR (Generalised Summary-data-based Mendelian Randomisation) method that uses GWAS summary statistics …☆19Apr 26, 2024Updated last year
- Software implementing the Latent Causal Variable Model☆64Jun 30, 2020Updated 5 years ago
- Meta-analysis of genomewide association scans☆63Jul 18, 2024Updated last year
- Python package to predict enhancer-gene interactions supervised on CRISPRi data☆15Nov 21, 2023Updated 2 years ago
- Genetic association studies☆16Oct 29, 2024Updated last year
- ☆15Nov 17, 2025Updated 3 months ago
- PRS pipeline using PRS_CS☆15Oct 21, 2025Updated 4 months ago
- ☆35Dec 19, 2023Updated 2 years ago
- PhenoPLIER☆15Apr 8, 2024Updated last year
- Fine-mapping with infinitesimal effects☆20May 27, 2025Updated 9 months ago
- ☆20Sep 12, 2025Updated 5 months ago
- ☆17Aug 25, 2025Updated 6 months ago
- Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337☆18Aug 30, 2024Updated last year
- Variance stabilizing transformation for Gamma Poisson distributed data☆22Apr 11, 2023Updated 2 years ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆14Nov 9, 2023Updated 2 years ago
- ☆49Jun 24, 2025Updated 8 months ago
- An interactive graphical illustration of genetic associations and their biological context☆17Mar 14, 2024Updated last year