Alternatives and similar repositories for CCGWAS

Users that are interested in CCGWAS are comparing it to the libraries listed below

• JianYang-Lab / gsmr2
  The gsmr R-package implements the GSMR (Generalised Summary-data-based Mendelian Randomisation) method that uses GWAS summary statistics …
  ☆17Updated last year
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆27Updated last week
• yuanzhongshang / PMR
  ☆24Updated 4 years ago
• Marijn-Schipper / FLAMES
  FLAMES: Accurate gene prioritization in GWAS loci
  ☆41Updated 5 months ago
• bogdanlab / fizi
  Leveraging functional information to improve GWAS summary statistic imputation
  ☆19Updated 4 years ago
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆41Updated 7 years ago
• qlu-lab / PUMAS
  Fine-tuning polygenic risk score models using GWAS summary statistics
  ☆52Updated 5 months ago
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated last year
• clagiamba / moloc
  ☆36Updated 4 years ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆46Updated last year
• mancusolab / ma-focus
  MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets
  ☆34Updated last year
• jrs95 / gassocplot
  Regional association plots
  ☆26Updated last year
• zhilizheng / SBayesRC
  ☆39Updated last month
• cnfoley / mrclust
  R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.
  ☆17Updated 3 years ago
• mkanai / ldsc-corrplot-rg
  corrplot of LDSC genetic correlation results
  ☆52Updated 3 years ago
• jean997 / cause
  R package for CAUSE
  ☆56Updated last year
• marcoralab / MRcovid
  ☆11Updated 3 years ago
• qlu-lab / SUPERGNOVA
  ☆28Updated 3 years ago
• cnfoley / hyprcoloc
  R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
  ☆55Updated 4 years ago
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆33Updated 4 years ago
• WenjianBI / SPACox
  GWAS for survival analysis in large cohorts
  ☆21Updated last year
• cuelee / pleio
  ☆19Updated last year
• hakyimlab / scPrediXcan
  ☆29Updated last month
• buutrg / PRSmix
  ☆18Updated 3 weeks ago
• sb452 / mr-code
  Code for implementing Mendelian randomization investigations
  ☆18Updated 9 years ago
• gamazonlab / MR-JTI
  ☆57Updated 6 months ago
• xtonyjiang / GNOVA
  A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.
  ☆30Updated last year
• statgen / METAL
  Meta-analysis of genomewide association scans
  ☆60Updated last year
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 4 years ago
• RajLabMSSM / echolocatoR
  Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
  ☆38Updated 2 years ago