Alternatives and similar repositories for CCGWAS

Users that are interested in CCGWAS are comparing it to the libraries listed below

• JianYang-Lab / gsmr2
  The gsmr R-package implements the GSMR (Generalised Summary-data-based Mendelian Randomisation) method that uses GWAS summary statistics …
  ☆17Updated last year
• yuanzhongshang / PMR
  ☆27Updated 5 years ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆48Updated 2 years ago
• clagiamba / moloc
  ☆37Updated 4 years ago
• cnfoley / hyprcoloc
  R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
  ☆57Updated 4 years ago
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆31Updated 3 weeks ago
• mancusolab / ma-focus
  MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets
  ☆38Updated last year
• buutrg / PRSmix
  ☆20Updated 5 months ago
• precimed / pleiofdr
  Pleiotropy-informed conditional and conjunctional false discovery rate
  ☆36Updated 6 months ago
• mancusolab / FactorGo
  Software to infer latent pleiotropic components from GWAS summary data
  ☆15Updated 11 months ago
• qlu-lab / PUMAS
  Fine-tuning polygenic risk score models using GWAS summary statistics
  ☆54Updated 2 months ago
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42Updated 7 years ago
• statgen / METAL
  Meta-analysis of genomewide association scans
  ☆63Updated last year
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆50Updated 2 weeks ago
• zhilizheng / SBayesRC
  ☆46Updated 6 months ago
• Cloufield / formatbook
  A collection of commonly used formats for quick lookup.
  ☆14Updated 4 months ago
• thewonlab / H-MAGMA
  ☆35Updated 2 years ago
• qlu-lab / SUPERGNOVA
  ☆30Updated 4 years ago
• FinucaneLab / pops
  ☆87Updated 5 months ago
• jean997 / cause
  R package for CAUSE
  ☆56Updated 2 years ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆53Updated 6 months ago
• opain / GenoPred
  Genotype-based Prediction (GenoPred)
  ☆76Updated 2 weeks ago
• mkanai / ldsc-corrplot-rg
  corrplot of LDSC genetic correlation results
  ☆56Updated 3 years ago
• Marijn-Schipper / FLAMES
  FLAMES: Accurate gene prioritization in GWAS loci
  ☆57Updated 2 weeks ago
• gamazonlab / MR-JTI
  ☆57Updated 11 months ago
• Jeremy37 / AD_finemap
  Code supporting analyses in paper on fine-mapping AD loci
  ☆16Updated 4 years ago
• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆32Updated last year
• marcoralab / MRcovid
  ☆13Updated 3 years ago
• WenjianBI / SPACox
  GWAS for survival analysis in large cohorts
  ☆22Updated last year
• Kyoko-wtnb / FUMA-circos-plot
  Configs and descriptions of circos plots created on FUMA web application
  ☆15Updated 8 years ago