Alternatives and similar repositories for CCGWAS

Users that are interested in CCGWAS are comparing it to the libraries listed below

• JianYang-Lab / gsmr2
  The gsmr R-package implements the GSMR (Generalised Summary-data-based Mendelian Randomisation) method that uses GWAS summary statistics …
  ☆17Updated last year
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆31Updated last week
• qlu-lab / SUPERGNOVA
  ☆30Updated 4 years ago
• clagiamba / moloc
  ☆38Updated 5 years ago
• mancusolab / ma-focus
  MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets
  ☆38Updated last year
• mancusolab / FactorGo
  Software to infer latent pleiotropic components from GWAS summary data
  ☆15Updated last year
• cnfoley / hyprcoloc
  R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
  ☆59Updated 4 years ago
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42Updated 7 years ago
• yuanzhongshang / PMR
  ☆27Updated 5 years ago
• FinucaneLab / pops
  ☆89Updated 6 months ago
• precimed / gsa-mixer
  ☆20Updated 4 months ago
• precimed / pleiofdr
  Pleiotropy-informed conditional and conjunctional false discovery rate
  ☆36Updated 8 months ago
• gamazonlab / MR-JTI
  ☆57Updated last year
• xtonyjiang / GNOVA
  A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.
  ☆31Updated last year
• marcoralab / MRcovid
  ☆13Updated 3 years ago
• zhilizheng / SBayesRC
  ☆47Updated 7 months ago
• mkanai / ldsc-corrplot-rg
  corrplot of LDSC genetic correlation results
  ☆56Updated 3 years ago
• buutrg / PRSmix
  ☆21Updated 7 months ago
• cnfoley / mrclust
  R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.
  ☆17Updated 4 years ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆53Updated 7 months ago
• wuyangf7 / OPERA
  This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…
  ☆35Updated last year
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆55Updated last week
• qlu-lab / PUMAS
  Fine-tuning polygenic risk score models using GWAS summary statistics
  ☆54Updated 3 months ago
• hakyimlab / scPrediXcan
  ☆40Updated 3 weeks ago
• BioPsyk / cleansumstats
  Convert GWAS sumstat files into a common format with a common reference for positions, rsids and effect alleles.
  ☆24Updated 5 months ago
• Marijn-Schipper / FLAMES
  FLAMES: Accurate gene prioritization in GWAS loci
  ☆57Updated last month
• WenjianBI / SPACox
  GWAS for survival analysis in large cohorts
  ☆22Updated last year
• bogdanlab / fizi
  Leveraging functional information to improve GWAS summary statistic imputation
  ☆19Updated 4 years ago
• thewonlab / H-MAGMA
  ☆35Updated 2 years ago
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 4 years ago