Alternatives and similar repositories for CCGWAS

Users that are interested in CCGWAS are comparing it to the libraries listed below

• JianYang-Lab / gsmr2
  The gsmr R-package implements the GSMR (Generalised Summary-data-based Mendelian Randomisation) method that uses GWAS summary statistics …
  ☆17Updated last year
• Marijn-Schipper / FLAMES
  FLAMES: Accurate gene prioritization in GWAS loci
  ☆54Updated 8 months ago
• mancusolab / ma-focus
  MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets
  ☆38Updated last year
• yuanzhongshang / PMR
  ☆27Updated 5 years ago
• qlu-lab / PUMAS
  Fine-tuning polygenic risk score models using GWAS summary statistics
  ☆54Updated last month
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42Updated 7 years ago
• gamazonlab / MR-JTI
  ☆57Updated 10 months ago
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆30Updated last week
• FinucaneLab / pops
  ☆85Updated 3 months ago
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated last year
• clagiamba / moloc
  ☆37Updated 4 years ago
• buutrg / PRSmix
  ☆21Updated 4 months ago
• precimed / pleiofdr
  Pleiotropy-informed conditional and conjunctional false discovery rate
  ☆35Updated 5 months ago
• qlu-lab / SUPERGNOVA
  ☆30Updated 4 years ago
• jean997 / cause
  R package for CAUSE
  ☆56Updated last year
• MRC-Epid / pGWAS_discovery
  Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"
  ☆26Updated 4 years ago
• hakyimlab / scPrediXcan
  ☆34Updated 2 weeks ago
• zhilizheng / SBayesRC
  ☆44Updated 4 months ago
• cnfoley / hyprcoloc
  R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
  ☆56Updated 4 years ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆47Updated 2 years ago
• Kyoko-wtnb / FUMA-circos-plot
  Configs and descriptions of circos plots created on FUMA web application
  ☆15Updated 7 years ago
• bogdanlab / fizi
  Leveraging functional information to improve GWAS summary statistic imputation
  ☆19Updated 4 years ago
• cnfoley / mrclust
  R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.
  ☆17Updated 4 years ago
• cuelee / pleio
  ☆19Updated 3 months ago
• dingruofan / xQTLbiolinks
  xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs
  ☆37Updated 9 months ago
• marcoralab / MRcovid
  ☆13Updated 3 years ago
• mancusolab / FactorGo
  Software to infer latent pleiotropic components from GWAS summary data
  ☆15Updated 9 months ago
• wuyangf7 / OPERA
  This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…
  ☆36Updated last year
• thewonlab / H-MAGMA
  ☆35Updated 2 years ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆53Updated 5 months ago