Alternatives and similar repositories for QTLpoly

Users that are interested in QTLpoly are comparing it to the libraries listed below

• dipetkov / eems
  Estimating Effective Migration Surfaces
  ☆103Updated last year
• voichek / kmersGWAS
  A library for running k-mers based GWAS
  ☆112Updated 9 months ago
• jendelman / GWASpoly
  GWAS software that can handle autopolyploids
  ☆28Updated 10 months ago
• Capblancq / RDA-landscape-genomics
  ☆31Updated 3 years ago
• enormandeau / stacks_workflow
  RADseq workflow using STACKS
  ☆59Updated last month
• silastittes / shiny_popgen
  Shiny apps for teaching Population Genetics
  ☆65Updated 2 years ago
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆83Updated 11 months ago
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆26Updated last year
• szpiech / selscan
  Haplotype based scans for selection
  ☆131Updated 3 weeks ago
• jpuritz / dDocent
  a bash pipeline for RAD sequencing
  ☆55Updated 6 months ago
• gdlc / BGLR-R
  ☆108Updated last month
• jingwanglab / Populus_genomic_prediction_climate_vulnerability
  ☆41Updated 2 years ago
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆87Updated 3 years ago
• pgugger / LandscapeGenomics
  Tutorials for bioinformatics and data analysis related to landscape genomics
  ☆29Updated 6 years ago
• speciationgenomics / presentations
  Presentations from the course
  ☆38Updated last year
• hardingnj / xpclr
  Code to compute the XP-CLR statistic to infer natural selection
  ☆98Updated 3 years ago
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆30Updated last week
• bsmota / aDNA_imputation
  ☆14Updated 8 months ago
• lvclark / polyRAD
  Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝
  ☆31Updated 5 months ago
• MarcooLopez / Genomic-Selection
  ☆25Updated 4 years ago
• Tom-Jenkins / mapmixture
  R package and web app for spatial visualisation of admixture on a projected map
  ☆44Updated 4 months ago
• steuernb / AgRenSeq
  ☆13Updated 2 years ago
• TickingClock1992 / RIdeogram
  ☆179Updated 4 years ago
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆43Updated 6 years ago
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆60Updated 9 months ago
• jasonleebrown / UCE_phyluce_pipeline
  UCE Bioinformatics Pipeline
  ☆16Updated 8 months ago
• BGI-shenzhen / VCF2Dis
  VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…
  ☆97Updated 2 months ago
• rapidspeciation / biodiversity_genomics_course
  biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute
  ☆54Updated 2 months ago
• mossmatters / HybPiper
  Recovering genes from targeted sequence capture data
  ☆126Updated last month
• ksamuk / pixy
  Software for painlessly estimating average nucleotide diversity within and between populations
  ☆140Updated this week