BIMSBbioinfo / compgen2021View external linksLinks
☆77Sep 13, 2021Updated 4 years ago
Alternatives and similar repositories for compgen2021
Users that are interested in compgen2021 are comparing it to the libraries listed below
Sorting:
- Structural variant pipeline☆18Jun 25, 2020Updated 5 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Aug 17, 2021Updated 4 years ago
- STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed spe…☆18Aug 17, 2025Updated 5 months ago
- Scripts to reproduce TrioBinning manuscript☆17Mar 31, 2020Updated 5 years ago
- Course website for Genomic Data Visualization 2022☆16Dec 28, 2022Updated 3 years ago
- iread☆25Jul 16, 2021Updated 4 years ago
- Simple R script for plotting ideograms and annotating with bed files.☆12Sep 21, 2015Updated 10 years ago
- ☆11Jul 13, 2018Updated 7 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆11Feb 4, 2026Updated last week
- reference implementation of GA4GH WGS Quality Control Standards☆11Nov 25, 2025Updated 2 months ago
- GitHub Actions for developing and maintaining Bioconductor packages☆13Nov 13, 2025Updated 3 months ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Dec 8, 2020Updated 5 years ago
- The Agentic BioML Challenge + AutoBioML framework☆18Jun 3, 2025Updated 8 months ago
- A tool for diagnosing SMA in exome, genome or targeted sequencing data☆13Apr 30, 2025Updated 9 months ago
- Introduction to Python Programming☆11Mar 31, 2020Updated 5 years ago
- Open source tools and papers for structural variant analysis.☆12Feb 24, 2019Updated 6 years ago
- dendrograms in ggplot2.☆10Jul 7, 2021Updated 4 years ago
- isoCirc☆10Nov 27, 2023Updated 2 years ago
- Tutorials for data science and bioinformatics☆13May 3, 2024Updated last year
- Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data☆12Dec 11, 2025Updated 2 months ago
- repository for the single cell RNA-Seq workshop☆31Apr 20, 2021Updated 4 years ago
- Targeted and non-targeted anticancer drugs and drug regimens☆30Jan 21, 2026Updated 3 weeks ago
- Updated figures for "A benchmarking of WGS-based structural variant callers" paper☆27Apr 3, 2022Updated 3 years ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆30Nov 25, 2024Updated last year
- Unix, R and python tools for genomics and data science☆1,367Aug 25, 2025Updated 5 months ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆13Jun 12, 2024Updated last year
- Meta-Analysis for JAMOVI☆11Nov 11, 2017Updated 8 years ago
- Do microbiome analysis with dada2 and phyloseq object☆14Oct 9, 2024Updated last year
- VEP Plugin to annotate high-impact five prime UTR variants☆28Aug 23, 2024Updated last year
- Method to detect exonic CNVs in NGS Gene Targeted Panels☆16Dec 3, 2019Updated 6 years ago
- Introductory workshop teaching python for Data Science and Biomedical Machine Learning☆12May 13, 2022Updated 3 years ago
- UVC, a very accurate small-variant caller (https://doi.org/10.1093/bib/bbab458)☆14May 18, 2025Updated 8 months ago
- Suite of analysis tools for spatial total RNA-sequencing☆12Aug 10, 2023Updated 2 years ago
- Junction Based Analysis of Splicing Events for RNA-Seq☆34Sep 16, 2025Updated 4 months ago
- Winter 2021, GGG 298 - Tools for Data Intensive Research - UC Davis☆12Mar 10, 2021Updated 4 years ago
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆35Dec 5, 2025Updated 2 months ago
- PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using …☆30Jun 17, 2025Updated 7 months ago
- Tandem repeat genotyping from long reads☆20Updated this week
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago