fraenkel-lab / OmicsIntegrator2Links
Prize-Collecting Steiner Forests for Interactomes
☆62Updated last year
Alternatives and similar repositories for OmicsIntegrator2
Users that are interested in OmicsIntegrator2 are comparing it to the libraries listed below
Sorting:
- CMap Notebooks for LINCS 2020 Workshop☆49Updated 4 years ago
- What you need to process the Quarterly DepMap-Omics releases from Terra☆125Updated 3 months ago
- MONET : MOdularising NEtwork Toolbox - https://doi.org/10.1093/bioinformatics/btaa236☆47Updated 4 years ago
- Connectivity Map analysis in MATLAB☆46Updated 4 years ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆57Updated 7 months ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆63Updated 2 weeks ago
- Deep Learning Method to Identify Cancer Associated TCRs☆47Updated 3 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆73Updated 2 weeks ago
- CAusal Reasoning for Network Identification with integer VALue programming in R☆61Updated 2 years ago
- GeneWalk identifies relevant gene functions for a biological context using network representation learning☆133Updated last year
- flexible CDR based distance metrics☆69Updated last week
- Knowledge-primed neural networks☆38Updated 2 years ago
- ☆38Updated 2 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- ☆18Updated 3 years ago
- repository containing analysis scripts and auxiliary files☆36Updated 5 years ago
- A shiny-based web tool for interactive analysis of DepMap data☆24Updated 4 years ago
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆61Updated 4 months ago
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆37Updated last week
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 3 years ago
- ☆68Updated 2 years ago
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆34Updated 9 months ago
- DIABLO - an integrative multi-group, multi-dataset classification method☆26Updated 6 years ago
- Code related to the Celligner manuscript☆46Updated 5 years ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆96Updated 5 years ago
- Functional Embedding of Gene Signatures☆48Updated last year
- Python package to load and query ARCHS4 data☆24Updated 5 months ago
- R package to access DoRothEA's regulons☆152Updated last year
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆62Updated last month
- ☆49Updated 3 years ago