Examples for the Google Genomics Pipelines API.
☆50Dec 15, 2017Updated 8 years ago
Alternatives and similar repositories for pipelines-api-examples
Users that are interested in pipelines-api-examples are comparing it to the libraries listed below
Sorting:
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- Framework for running bioinformatic workflows and pipelines using the Google Pipelines API as the underlying task-runner.☆12Mar 22, 2017Updated 8 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Sep 20, 2023Updated 2 years ago
- Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.☆276Feb 3, 2026Updated last month
- Grid Engine on Compute Engine provides a shell script to manage a Compute Engine cluster along with instructions on how to install and c…☆22Jan 8, 2018Updated 8 years ago
- A tool for running bioinformatics workflows locally or in the cloud.☆30Dec 13, 2019Updated 6 years ago
- Scripts and samples for using Grid Engine on Google Cloud Platform.☆13Aug 2, 2017Updated 8 years ago
- Image and VM management for Jenkins, Spark and Mesos clusters in EC2☆22Jul 24, 2020Updated 5 years ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆47Jul 12, 2020Updated 5 years ago
- Dockerflow is a workflow runner that uses Dataflow to run a series of tasks in Docker with the Pipelines API☆101Nov 21, 2017Updated 8 years ago
- Library of snakemake rules.☆12Oct 2, 2018Updated 7 years ago
- ☆30Oct 6, 2021Updated 4 years ago
- Processing of single cell RNAseq data for the recovery of TCRs in python☆30Nov 25, 2020Updated 5 years ago
- Gene expression in neuroexpresso database☆18Oct 25, 2024Updated last year
- GenomicsDB☆109Jan 3, 2023Updated 3 years ago
- command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig☆16May 2, 2020Updated 5 years ago
- Tools for developing and running pipelines with the Genomics API☆24Jan 16, 2020Updated 6 years ago
- ☆35Sep 28, 2020Updated 5 years ago
- Flexible Integration of Data with Deep LEarning☆51Mar 24, 2023Updated 2 years ago
- haplotypes genotypes and alleles example decision synthesizer☆20Jun 13, 2019Updated 6 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Dec 15, 2022Updated 3 years ago
- commandline manipulation of genomic variants and NGS reads☆19Sep 6, 2024Updated last year
- NGS Language Bindings☆120Dec 6, 2023Updated 2 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆398Aug 30, 2025Updated 6 months ago
- APIs for discovering genomics tools, their metadata and their containers☆34Feb 26, 2026Updated last week
- Tutorial for working with cloud infrastructure and AWS from R☆20Jul 26, 2017Updated 8 years ago
- Code to reproduce analyses from the sleuth paper☆16Nov 20, 2018Updated 7 years ago
- RNA-Seq Snakemake example with Jekyll homepage creation☆20Feb 20, 2014Updated 12 years ago
- ☆10May 17, 2017Updated 8 years ago
- S3proxy provides a simple REST-interface to files and keys stored on the AWS S3 service.☆13Apr 2, 2014Updated 11 years ago
- ☆36Aug 13, 2020Updated 5 years ago
- Seqnature: incorporate SNPs and Indels into a reference genome☆16Sep 6, 2016Updated 9 years ago
- Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead☆32Aug 16, 2017Updated 8 years ago
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 3 years ago
- A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.☆323Mar 6, 2025Updated 11 months ago
- Computable build reports, package metadata, and download stats from the Bioconductor project☆22Feb 3, 2026Updated last month
- Marker gene profile estimation method used in NeuroExpresso manuscript☆14Jul 11, 2019Updated 6 years ago
- Exercises for training scientists to perform some RNA-seq analyses.☆11Oct 7, 2019Updated 6 years ago
- Gene Expression Atlas☆21Dec 16, 2022Updated 3 years ago