Examples for the Google Genomics Pipelines API.
☆50Dec 15, 2017Updated 8 years ago
Alternatives and similar repositories for pipelines-api-examples
Users that are interested in pipelines-api-examples are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- Framework for running bioinformatic workflows and pipelines using the Google Pipelines API as the underlying task-runner.☆12Mar 22, 2017Updated 9 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Sep 20, 2023Updated 2 years ago
- Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.☆277Mar 12, 2026Updated last week
- Grid Engine on Compute Engine provides a shell script to manage a Compute Engine cluster along with instructions on how to install and c…☆22Jan 8, 2018Updated 8 years ago
- ☆30Oct 6, 2021Updated 4 years ago
- Image and VM management for Jenkins, Spark and Mesos clusters in EC2☆22Jul 24, 2020Updated 5 years ago
- A tool for running bioinformatics workflows locally or in the cloud.☆30Dec 13, 2019Updated 6 years ago
- Scripts and samples for using Grid Engine on Google Cloud Platform.☆13Aug 2, 2017Updated 8 years ago
- Dockerflow is a workflow runner that uses Dataflow to run a series of tasks in Docker with the Pipelines API☆101Nov 21, 2017Updated 8 years ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆47Jul 12, 2020Updated 5 years ago
- ☆35Sep 28, 2020Updated 5 years ago
- command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig☆16May 2, 2020Updated 5 years ago
- Rails application for storing and parsing clinical exome VCF files. Gene annotations can be retrieved via Biomart integration from Ensemb…☆10May 7, 2017Updated 8 years ago
- GenomicsDB☆109Jan 3, 2023Updated 3 years ago
- commandline manipulation of genomic variants and NGS reads☆19Sep 6, 2024Updated last year
- ☆36Aug 13, 2020Updated 5 years ago
- Seqnature: incorporate SNPs and Indels into a reference genome☆16Sep 6, 2016Updated 9 years ago
- Browser for ExAC consortium data☆12Oct 23, 2017Updated 8 years ago
- [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0☆75Nov 18, 2020Updated 5 years ago
- Tools for developing and running pipelines with the Genomics API☆24Jan 16, 2020Updated 6 years ago
- tranSMART is a knowledge management platform that enables scientists to develop and refine research hypotheses by investigating correlati…☆71Jul 20, 2018Updated 7 years ago
- Add functional variant annotation to MAF file☆11Nov 20, 2024Updated last year
- Generate HTML report for a set of genomic regions or DESeq2/edgeR results☆10Jan 14, 2025Updated last year
- APIs for discovering genomics tools, their metadata and their containers☆34Feb 26, 2026Updated 3 weeks ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆399Aug 30, 2025Updated 6 months ago
- haplotypes genotypes and alleles example decision synthesizer☆20Jun 13, 2019Updated 6 years ago
- ☆93Feb 25, 2026Updated last month
- CWL for GDC DNASeq workflows☆23Updated this week
- Models and APIs for Genomic data. RETIRED 2018-01-24☆220Oct 28, 2022Updated 3 years ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Apr 19, 2016Updated 9 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Dec 15, 2022Updated 3 years ago
- ☆10May 17, 2017Updated 8 years ago
- Flexible Integration of Data with Deep LEarning☆51Mar 24, 2023Updated 3 years ago
- This repo is NO LONGER IN USE. Please see Opentrons/opentrons instead.☆15Oct 4, 2017Updated 8 years ago
- Python bindings for WDL☆10Nov 9, 2017Updated 8 years ago
- Protocols for Secure Genomic Computation☆12Aug 28, 2017Updated 8 years ago
- Deprecated☆101Aug 12, 2019Updated 6 years ago
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Jul 29, 2019Updated 6 years ago