googlegenomics / pipelines-api-examples
Examples for the Google Genomics Pipelines API.
☆50Updated 7 years ago
Alternatives and similar repositories for pipelines-api-examples:
Users that are interested in pipelines-api-examples are comparing it to the libraries listed below
- SEQSpark documentation☆18Updated 4 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens☆19Updated 6 years ago
- Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…☆22Updated 6 years ago
- Multi-sample somatic variant caller☆50Updated 3 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆34Updated 8 years ago
- Exon-exon splice junctions across SRA☆40Updated 3 years ago
- FireCloud Service Selector (FISS) -- Python bindings and CLI for FireCloud execution engine☆31Updated last month
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆97Updated 2 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- Library for manipulating genomic variants and predicting their effects☆84Updated 9 months ago
- ☆68Updated 2 years ago
- Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)☆87Updated 7 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- CWL tools and workflows for GGR☆21Updated 3 years ago
- A collection of Python clients and accessory scripts for interacting with the Cromwell☆22Updated 2 years ago
- EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding o…☆69Updated 2 years ago
- SevenBridges Python Api bindings☆46Updated 2 months ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- ☆23Updated 6 years ago
- ☆82Updated 3 years ago
- Website to analyze conflicting assertions in ClinVar☆18Updated last year
- Python library and scripts for retrieval and storage of genomics data in HDF5 format☆26Updated 6 years ago
- ☆9Updated 7 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 4 months ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 5 years ago