pachterlab / sleuth_paper_analysisLinks
Code to reproduce analyses from the sleuth paper
☆16Updated 6 years ago
Alternatives and similar repositories for sleuth_paper_analysis
Users that are interested in sleuth_paper_analysis are comparing it to the libraries listed below
Sorting:
- fast webservices based query tool for large sets of genomic features☆25Updated 2 months ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆70Updated last year
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Updated last year
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- ☆20Updated 8 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- Benchmarks for RNA-seq quantification pipelines☆8Updated 5 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Personal diploid genome creation and coordinate conversion☆30Updated 4 months ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Fast fusion detection using kallisto☆80Updated last month
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆33Updated 3 years ago