Code to reproduce analyses from the sleuth paper
☆16Nov 20, 2018Updated 7 years ago
Alternatives and similar repositories for sleuth_paper_analysis
Users that are interested in sleuth_paper_analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Mapping-free variant caller for short-read Illumina data☆21Apr 2, 2020Updated 6 years ago
- ☆12Jul 25, 2019Updated 6 years ago
- ☆28Feb 6, 2019Updated 7 years ago
- Clustering cells from single cell RNA seq assays☆46Nov 19, 2018Updated 7 years ago
- variant integration methods for the 1000 Genomes Project☆21Jan 16, 2018Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A succinct colored dBG representation☆12Sep 11, 2018Updated 7 years ago
- Use gene expression to predict phenotype sample information☆19Feb 13, 2018Updated 8 years ago
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Sep 20, 2017Updated 8 years ago
- Examples of kallisto + sleuth☆11May 18, 2017Updated 9 years ago
- Scripts for generating integrated dataset from publically available data sources to evaluate known genetic associations evidence of varyi…☆11May 5, 2020Updated 6 years ago
- List of conferences with talk videos posted online☆12Sep 23, 2023Updated 2 years ago
- Robust Open Reading Frame prediction (ANGLE re-implementation)☆16Aug 2, 2021Updated 4 years ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Jul 26, 2017Updated 8 years ago
- A Python library for interacting with ENA's API☆25Aug 10, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆19Jun 29, 2022Updated 4 years ago
- Differential analysis of RNA-Seq☆315May 28, 2025Updated last year
- haplotypes genotypes and alleles example decision synthesizer☆20Jun 13, 2019Updated 7 years ago
- Gene Expression Atlas☆21Dec 16, 2022Updated 3 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- robust matching of small variant datasets using flexible scoring schemes☆12Mar 26, 2020Updated 6 years ago
- Software for exploration of gene expression data from single-cell RNA sequencing.☆28Jun 20, 2019Updated 7 years ago
- Unix-based RNA-seq quantification pipeline☆10Nov 18, 2015Updated 10 years ago
- ☆18Sep 4, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A software tool for personalized and allele-specific CRISPR editing.☆18Feb 1, 2022Updated 4 years ago
- Frontend repository for COVID-19 self-reporting tool in React☆10Aug 2, 2021Updated 4 years ago
- Brain-related -omics data☆28Mar 21, 2026Updated 3 months ago
- Population-scale detection of novel sequence insertions☆28Aug 16, 2022Updated 3 years ago
- A R Bioconductor package for accessing MyGene.info services☆11Jun 22, 2018Updated 8 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆40Jul 9, 2021Updated 4 years ago
- Scripts☆10Jun 29, 2016Updated 10 years ago
- A RepSeq processing swiss-knife☆43Mar 29, 2024Updated 2 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Jul 8, 2025Updated 11 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Finding a scalable alternative to the VCF File for genomics analysis☆14Jan 5, 2017Updated 9 years ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 5 years ago
- Text Formatting Plugin☆28Jun 10, 2022Updated 4 years ago
- Coding Genome Reconstruction using Iso-Seq data☆60Oct 20, 2021Updated 4 years ago
- Deep Feature Interaction Maps (DFIM)☆53Apr 9, 2019Updated 7 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Sep 20, 2023Updated 2 years ago
- a Contig Alignment Tool for Pairwise Assembly Comparison☆12Dec 11, 2019Updated 6 years ago