pachterlab / sleuth_paper_analysisLinks
Code to reproduce analyses from the sleuth paper
☆16Updated 7 years ago
Alternatives and similar repositories for sleuth_paper_analysis
Users that are interested in sleuth_paper_analysis are comparing it to the libraries listed below
Sorting:
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 8 months ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- create a gemini-compatible database from a VCF☆55Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 7 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- ☆26Updated 5 years ago
- BigWig manpulation tools using libBigWig and htslib☆30Updated last year
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- DRAGEN Tumor/Normal workflow post-processing☆25Updated 2 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- Analysis from kallisto paper☆32Updated 9 years ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Updated last year
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 4 years ago
- A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago
- Keep Me Around: Intron Retention Detection☆30Updated 6 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆42Updated last year
- Personal diploid genome creation and coordinate conversion☆30Updated 9 months ago
- Fast fusion detection using kallisto☆79Updated 7 months ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago