Alternatives and similar repositories for dsub:

Users that are interested in dsub are comparing it to the libraries listed below

• googlegenomics / gcp-variant-transforms
  GCP Variant Transforms
  ☆138Updated 2 years ago
• Intel-HLS / GenomicsDB
  GenomicsDB
  ☆111Updated 2 years ago
• chanzuckerberg / miniwdl
  Workflow Description Language developer tools & local runner
  ☆181Updated 6 months ago
• bigdatagenomics / mango
  A scalable genome browser. Apache 2 licensed.
  ☆125Updated 2 years ago
• googlegenomics / dockerflow
  Dockerflow is a workflow runner that uses Dataflow to run a series of tasks in Docker with the Pipelines API
  ☆96Updated 7 years ago
• nextflow-io / patterns
  A curated collection of Nextflow implementation patterns
  ☆339Updated last year
• base2genomics / batchit
  simple jobs submission via command-line for AWS batch
  ☆80Updated 5 years ago
• aws-samples / aws-genomics-workflows
  Genomics Workflows on AWS
  ☆145Updated last year
• ga4gh / ga4gh-server
  Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
  ☆98Updated 7 years ago
• sgkit-dev / sgkit
  Scalable genetics toolkit
  ☆249Updated last week
• 4dn-dcic / tibanna
  Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…
  ☆70Updated 3 months ago
• TileDB-Inc / TileDB-VCF
  Efficient variant-call data storage and retrieval library using the TileDB storage library.
  ☆92Updated this week
• Mizzou-CBMI / COSMOS2
  Python Scientific Pipeline Management System
  ☆71Updated last year
• nextflow-io / awesome-nextflow
  A curated list of nextflow based pipelines
  ☆579Updated 2 years ago
• Barski-lab / cwl-airflow
  Python package to extend Airflow functionality with CWL1.1 support
  ☆186Updated last year
• seqeralabs / nf-tower
  Nextflow Tower system
  ☆148Updated 3 weeks ago
• higlass / higlass
  Fast, flexible and extensible genome browser.
  ☆318Updated this week
• openwdl / wdl
  Specification for the Workflow Description Language (WDL).
  ☆794Updated this week
• broadgsa / gatk
  Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk…
  ☆294Updated 6 years ago
• cggh / scikit-allel
  A Python package for exploring and analysing genetic variation data
  ☆294Updated 3 weeks ago
• aws-samples / aws-batch-genomics
  Software sets up and runs an genome sequencing analysis workflow using AWS Batch and AWS Step Functions.
  ☆201Updated 4 years ago
• Intel-HLS / TileDB
  TileDB
  ☆79Updated last year
• Illumina / hap.py
  Haplotype VCF comparison tools
  ☆421Updated last year
• projectglow / glow
  An open-source toolkit for large-scale genomic analysis
  ☆273Updated this week
• broadinstitute / cromwell
  Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale product…
  ☆1,009Updated this week
• common-workflow-language / cwltool
  Common Workflow Language reference implementation
  ☆343Updated this week
• broadgsa / gatk-protected
  Official code repository for GATK versions 1.0 through 3.7 (full licensed package). For GATK 4 code, see the https://github.com/broadinst…
  ☆143Updated 6 years ago
• dockstore / dockstore
  An app store for scientific workflows, tools, notebooks, and services
  ☆124Updated last week
• brentp / cyvcf2
  cython + htslib == fast VCF and BCF processing
  ☆390Updated 5 months ago
• amplab / snap
  Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data
  ☆289Updated last week