Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.
☆277Mar 12, 2026Updated last week
Alternatives and similar repositories for dsub
Users that are interested in dsub are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Examples for the Google Genomics Pipelines API.☆50Dec 15, 2017Updated 8 years ago
- Tools for developing and running pipelines with the Genomics API☆24Jan 16, 2020Updated 6 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- Easily run WDL workflows on GCP☆14Sep 28, 2021Updated 4 years ago
- Dockerflow is a workflow runner that uses Dataflow to run a series of tasks in Docker with the Pipelines API☆101Nov 21, 2017Updated 8 years ago
- paplot creates various dynamic and interactive reports for cancer genome analysis.☆26Feb 1, 2023Updated 3 years ago
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 10 years ago
- Parallel Block GZIP☆50Aug 4, 2016Updated 9 years ago
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Jul 29, 2019Updated 6 years ago
- ☆93Feb 25, 2026Updated last month
- A scala based DSL and framework for writing and executing bioinformatics pipelines as Directed Acyclic GRaphs☆69May 27, 2022Updated 3 years ago
- ☆32Jan 9, 2026Updated 2 months ago
- ☆11Dec 8, 2022Updated 3 years ago
- The main website for the OpenMendel project.☆13Jul 24, 2022Updated 3 years ago
- R package for extracting mutation signatures from a list of somatic mutations☆37Aug 9, 2019Updated 6 years ago
- GCP Variant Transforms☆143Jun 30, 2025Updated 8 months ago
- ☆15Oct 19, 2023Updated 2 years ago
- Open Source implementation of the GA4GH htsget protocol for objects stored in Google Cloud Storage☆25Nov 19, 2019Updated 6 years ago
- Client side iobio library for building and executing iobio commands☆10Dec 31, 2018Updated 7 years ago
- Convert CWL to WDL☆17Oct 17, 2016Updated 9 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Mar 5, 2019Updated 7 years ago
- GenomicsDB☆109Jan 3, 2023Updated 3 years ago
- Specification for the Workflow Description Language (WDL).☆847Mar 18, 2026Updated last week
- A tool for phasing and imputing haplotypes in 10k+ low coverage sequencing samples☆10Nov 20, 2020Updated 5 years ago
- Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale product…☆1,055Mar 16, 2026Updated last week
- Workflow Description Language compiler for the DNAnexus platform☆42Jun 29, 2023Updated 2 years ago
- biogo high throughput sequencing repository☆133Aug 28, 2025Updated 6 months ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Mar 25, 2022Updated 4 years ago
- sort genomic data☆36Nov 7, 2025Updated 4 months ago
- Job Manager API and UI for interacting with asynchronous batch jobs and workflows.☆27Updated this week
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆225Sep 18, 2025Updated 6 months ago
- FireCloud Service Selector (FISS) -- Python bindings and CLI for FireCloud execution engine☆34Jan 13, 2026Updated 2 months ago
- Novel Adjacency Identification with Barcoded Reads☆13Apr 19, 2022Updated 3 years ago
- structure detection program☆18Nov 20, 2024Updated last year
- Image and VM management for Jenkins, Spark and Mesos clusters in EC2☆22Jul 24, 2020Updated 5 years ago
- [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0☆75Nov 18, 2020Updated 5 years ago
- An app store for scientific workflows, tools, notebooks, and services☆132Updated this week
- Cloud-native genomic dataframes and batch computing☆1,050Mar 18, 2026Updated last week
- Web user interface for the Terra platform☆54Updated this week