DataBiosphere / dsub
Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.
☆265Updated 4 months ago
Alternatives and similar repositories for dsub:
Users that are interested in dsub are comparing it to the libraries listed below
- Workflow Description Language developer tools & local runner☆180Updated 5 months ago
- GCP Variant Transforms☆138Updated 2 years ago
- GenomicsDB☆111Updated 2 years ago
- Dockerflow is a workflow runner that uses Dataflow to run a series of tasks in Docker with the Pipelines API☆97Updated 7 years ago
- A scalable genome browser. Apache 2 licensed.☆125Updated 2 years ago
- Scalable genetics toolkit☆244Updated this week
- Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…☆70Updated last month
- Create clusters of VMs on the cloud and configure them with Ansible.☆336Updated last year
- Fast, flexible and extensible genome browser.☆315Updated 2 weeks ago
- Amazon Web Services Operator Interface☆68Updated last month
- Bpipe - a tool for running and managing bioinformatics pipelines☆233Updated 2 weeks ago
- A curated list of nextflow based pipelines☆577Updated 2 years ago
- A Python package for exploring and analysing genetic variation data☆290Updated 2 weeks ago
- Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24☆96Updated 6 years ago
- Efficient variant-call data storage and retrieval library using the TileDB storage library.☆91Updated last week
- An open-source toolkit for large-scale genomic analysis☆274Updated 2 weeks ago
- Genomics Workflows on AWS☆145Updated last year
- Python Scientific Pipeline Management System☆71Updated last year
- Extension for Jupyter which integrates igv.js☆154Updated 2 years ago
- Nextflow Tower system☆147Updated last year
- ☆82Updated 2 months ago
- A curated collection of Nextflow implementation patterns☆339Updated last year
- TileDB☆79Updated last year
- The WES API is a standard way to run and manage portable workflows.☆82Updated 3 months ago
- SDK for GPU accelerated genome assembly and analysis☆287Updated 8 months ago
- [Historical] Reproducible Analyses for Bioinformatics☆106Updated 5 years ago
- Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data☆288Updated last week
- cython + htslib == fast VCF and BCF processing☆386Updated 4 months ago
- The Nested Containment List for Python. Basically a static interval-tree that is silly fast for both construction and lookups.☆217Updated 4 months ago
- Refine.bio harmonizes petabytes of publicly available biological data into ready-to-use datasets for cancer researchers and AI/ML scienti…☆129Updated 4 months ago