Alternatives and similar repositories for dsub

Users that are interested in dsub are comparing it to the libraries listed below

• googlegenomics / gcp-variant-transforms
  GCP Variant Transforms
  ☆141Updated 2 months ago
• chanzuckerberg / miniwdl
  Workflow Description Language developer tools & local runner
  ☆194Updated last month
• ga4gh / task-execution-schemas
  ☆91Updated 2 weeks ago
• common-workflow-language / cwltool
  Common Workflow Language reference implementation
  ☆354Updated this week
• Intel-HLS / GenomicsDB
  GenomicsDB
  ☆110Updated 2 years ago
• bigdatagenomics / mango
  A scalable genome browser. Apache 2 licensed.
  ☆125Updated 2 years ago
• 4dn-dcic / tibanna
  Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…
  ☆69Updated last week
• ga4gh / ga4gh-server
  Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
  ☆98Updated 7 years ago
• ga4gh / workflow-execution-service-schemas
  The WES API is a standard way to run and manage portable workflows.
  ☆85Updated 2 weeks ago
• TileDB-Inc / TileDB-VCF
  Efficient variant-call data storage and retrieval library using the TileDB storage library.
  ☆98Updated this week
• Mizzou-CBMI / COSMOS2
  Python Scientific Pipeline Management System
  ☆71Updated 2 years ago
• HumanCellAtlas / data-store
  Design specs and prototypes for the HCA Data Storage System (DSS, "blue box")
  ☆41Updated 2 months ago
• AlexsLemonade / refinebio
  Refine.bio harmonizes petabytes of publicly available biological data into ready-to-use datasets for cancer researchers and AI/ML scienti…
  ☆132Updated last year
• dockstore / dockstore
  An app store for scientific workflows, tools, notebooks, and services
  ☆131Updated this week
• yakneens / butler
  Butler is a framework for running scientific workflows on public and academic clouds.
  ☆69Updated 5 years ago
• arvados / arvados
  An open source platform for managing and analyzing biomedical big data
  ☆409Updated this week
• sgkit-dev / sgkit
  Scalable genetics toolkit
  ☆262Updated 2 months ago
• higlass / higlass
  Fast, flexible and extensible genome browser.
  ☆332Updated 3 weeks ago
• rabix / bunny
  [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0
  ☆75Updated 4 years ago
• BioContainers / mulled
  Mulled - Automatized Containerized Software Repository
  ☆66Updated last year
• rabix / rabix
  [Historical] Reproducible Analyses for Bioinformatics
  ☆106Updated 6 years ago
• isb-cgc / examples-Python
  Analysis examples based on the ISB-CGC hosted TCGA data, using Python and IPython Notebooks.
  ☆54Updated 6 years ago
• cggh / scikit-allel
  A Python package for exploring and analysing genetic variation data
  ☆298Updated 2 weeks ago
• rabix / composer
  Visual and code editor for Common Workflow Language
  ☆308Updated 2 years ago
• dnanexus / dxWDL
  Workflow Description Language compiler for the DNAnexus platform
  ☆42Updated 2 years ago
• ohsu-comp-bio / funnel
  Funnel is a toolkit for distributed task execution via a simple, standard API.
  ☆131Updated this week
• ohsu-comp-bio / cwl-tes
  cwl-tes submits your tasks to a TES server. Task submission is parallelized when possible.
  ☆18Updated 2 years ago
• mlin / GenomicSQLite
  Genomics Extension for SQLite
  ☆165Updated last year
• EliLillyCo / pytest-wdl
  WDL plugin for pytest
  ☆48Updated 2 years ago
• aws-samples / aws-genomics-workflows
  Genomics Workflows on AWS
  ☆147Updated 2 years ago