DataBiosphere / dsubLinks
Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.
☆274Updated this week
Alternatives and similar repositories for dsub
Users that are interested in dsub are comparing it to the libraries listed below
Sorting:
- GCP Variant Transforms☆141Updated 6 months ago
- Workflow Description Language developer tools & local runner☆202Updated 2 months ago
- Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24☆99Updated 7 years ago
- GenomicsDB☆110Updated 3 years ago
- ☆93Updated last month
- Butler is a framework for running scientific workflows on public and academic clouds.☆70Updated 5 years ago
- simple jobs submission via command-line for AWS batch☆80Updated 6 years ago
- A scalable genome browser. Apache 2 licensed.☆126Updated 3 years ago
- The WES API is a standard way to run and manage portable workflows.☆86Updated last month
- Common Workflow Language reference implementation☆362Updated this week
- Python Scientific Pipeline Management System☆71Updated 2 years ago
- Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…☆71Updated 2 months ago
- An open source platform for managing and analyzing biomedical big data☆415Updated this week
- Efficient variant-call data storage and retrieval library using the TileDB storage library.☆99Updated last month
- An app store for scientific workflows, tools, notebooks, and services☆130Updated this week
- Dockerflow is a workflow runner that uses Dataflow to run a series of tasks in Docker with the Pipelines API☆100Updated 8 years ago
- Genomics Workflows on AWS☆147Updated 2 years ago
- [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0☆75Updated 5 years ago
- Workflow Description Language compiler for the DNAnexus platform☆42Updated 2 years ago
- A Python package for exploring and analysing genetic variation data☆307Updated last week
- Amazon Web Services Operator Interface☆69Updated 10 months ago
- Nextflow Tower system☆151Updated 11 months ago
- Bpipe - a tool for running and managing bioinformatics pipelines☆241Updated last month
- machine learning for genomic variants☆147Updated last month
- Server wrapper that turns command line tools into web services☆60Updated 7 years ago
- BigDataScript: Scirpting language for big data☆92Updated 4 years ago
- ☆146Updated last year
- Software sets up and runs an genome sequencing analysis workflow using AWS Batch and AWS Step Functions.☆203Updated 5 years ago
- An open-source toolkit for large-scale genomic analysis☆293Updated this week
- Scalable genetics toolkit☆271Updated 3 months ago