googlegenomics / pipelines-toolsLinks
Tools for developing and running pipelines with the Genomics API
☆24Updated 5 years ago
Alternatives and similar repositories for pipelines-tools
Users that are interested in pipelines-tools are comparing it to the libraries listed below
Sorting:
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- R tools to interact with hap.py output☆15Updated 5 years ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆47Updated 4 years ago
- Python client for GA4GH htsget protocol☆15Updated 2 years ago
- succinct labeled graphs with collections and paths☆15Updated 6 years ago
- normalize, left-align, trim, validate and clean VCF files☆20Updated 9 years ago
- Bonsai: Fast, flexible taxonomic analysis and classification☆70Updated last year
- utilities for indexing and sequence extraction from FASTA files☆59Updated 4 years ago
- software tool for the manipulation, annotation, selection, and analysis of variants in the context of next-gen sequencing analysis☆31Updated 3 years ago
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆22Updated 4 months ago
- Open Source implementation of the GA4GH htsget protocol for objects stored in Google Cloud Storage☆24Updated 5 years ago
- ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…☆23Updated 6 months ago
- Histosketching Using Little Kmers☆57Updated 2 years ago
- The command-line interface to GGD☆43Updated 2 years ago
- ☆36Updated last month
- Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.☆11Updated 5 years ago
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆32Updated 3 months ago
- Basic, no assumptions, multi-pileup☆24Updated 11 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆86Updated 6 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)☆14Updated 7 years ago
- The Ensembl Variation Perl API and SQL schema☆28Updated last week
- Aligner for sequencing data☆18Updated 7 years ago
- Docker images of bioinformatics software☆21Updated 7 years ago
- NGS duplicate marking☆19Updated 4 years ago
- cache packages permanently☆14Updated 11 months ago
- This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion☆21Updated 4 years ago
- APIs for discovering genomics tools, their metadata and their containers☆31Updated 7 months ago
- deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph☆30Updated 4 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago