googlegenomics / pipelines-tools
Tools for developing and running pipelines with the Genomics API
☆24Updated 5 years ago
Alternatives and similar repositories for pipelines-tools:
Users that are interested in pipelines-tools are comparing it to the libraries listed below
- normalize, left-align, trim, validate and clean VCF files☆20Updated 9 years ago
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- Bonsai: Fast, flexible taxonomic analysis and classification☆70Updated last year
- Histosketching Using Little Kmers☆56Updated last year
- Python client for GA4GH htsget protocol☆15Updated 2 years ago
- R tools to interact with hap.py output☆15Updated 5 years ago
- software tool for the manipulation, annotation, selection, and analysis of variants in the context of next-gen sequencing analysis☆31Updated 3 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 3 years ago
- Suite of tools for use in genome assembly and consensus. Work in progress.☆31Updated 4 years ago
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆32Updated last month
- ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…☆23Updated 5 months ago
- succinct labeled graphs with collections and paths☆15Updated 6 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆43Updated 5 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)☆14Updated 7 years ago
- Easily run WDL workflows on GCP☆13Updated 3 years ago
- The Ensembl Variation Perl API and SQL schema☆28Updated this week
- APIs for discovering genomics tools, their metadata and their containers☆31Updated 5 months ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 5 years ago
- Docker images of bioinformatics software☆21Updated 7 years ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆47Updated 4 years ago
- ☆36Updated last week
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- CoalHMM☆22Updated 11 years ago
- ☆11Updated 8 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- ☆9Updated 8 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Implicit Interval Tree with Interpolation Index☆41Updated 2 years ago