maurosilber / SMO
Robust and unbiased estimation of the background distribution for fluorescence microscopy.
☆12Updated 8 months ago
Alternatives and similar repositories for SMO:
Users that are interested in SMO are comparing it to the libraries listed below
- python tools for BigDataViewer☆21Updated 2 months ago
- ☆17Updated 2 years ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆12Updated last week
- Control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated last month
- Use Napari Viewer to display CZI images☆11Updated 2 years ago
- Denoising via adaptive binning.☆12Updated 8 months ago
- ☆29Updated 11 months ago
- ilastik plugin for napari☆14Updated 10 months ago
- A napari plugin to analysis point spread functions.☆12Updated 4 months ago
- An implementation agnostic schema for describing a sequence of events during a multi-dimensional imaging acquisition.☆17Updated last week
- Linking napari layers with Matplotlib plots☆40Updated this week
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 3 months ago
- Process and analyze surfaces using vedo in napari.☆24Updated 9 months ago
- ☆11Updated last year
- 1d plotting in napari-based canvas.☆26Updated this week
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- A minimal dependency napari plugin giving access to scikit-image functions☆17Updated 6 months ago
- Process images using SimpleITK in napari☆20Updated 5 months ago
- A self-supervised denoising algorithm.☆24Updated 11 months ago
- ☆47Updated 4 months ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆20Updated last month
- ImageJ convenience layer for N5☆16Updated 3 weeks ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆15Updated this week
- Running compute-intense parts of BigStitcher distributed☆24Updated this week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆16Updated this week
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated 3 months ago
- napari plugin for trackastra☆13Updated 4 months ago
- StarDist plugin for napari☆37Updated 6 months ago
- ☆21Updated last year
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆16Updated last year