Automating the creation of batch processing workflows in AWS!
☆48Apr 5, 2022Updated 4 years ago
Alternatives and similar repositories for shepard
Users that are interested in shepard are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Efficiently keep track of changes to genomes☆38Jul 22, 2024Updated last year
- Ginkgo SARS-CoV-2 synthesis efforts: overviews and data☆13Jun 7, 2020Updated 6 years ago
- An amino acid sequence annotator☆17May 15, 2025Updated last year
- Lab notebook for people who like the command line.☆11Mar 6, 2026Updated 3 months ago
- Deno runtime as a Lambda Layer☆20Aug 23, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- This project is an example of using AWS Step functions to manage and track a series of AWS Batch jobs in N_TO_N mode.☆15Jan 20, 2026Updated 5 months ago
- A Python molecular biology CAD tool with a dead-simple user interface☆13Dec 8, 2022Updated 3 years ago
- Library for visualising genomic features in Python.☆16May 12, 2017Updated 9 years ago
- ☆15Updated this week
- 🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies☆17Jan 23, 2023Updated 3 years ago
- A quickstart AWS Lambda function code generator. Downloads a template function code file, test harness file, sample SAM deffiniation and …☆22Aug 23, 2024Updated last year
- Run in-process code after your Go-powered Lambda function has returned☆23Mar 10, 2022Updated 4 years ago
- Web based Registry platform for managing synthetic biological parts☆44May 16, 2024Updated 2 years ago
- Python for Command Line Oneliners☆19Jan 5, 2015Updated 11 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Just some light reading.☆22Jan 22, 2020Updated 6 years ago
- Copy number estimation of highly duplicated sequences☆10Aug 15, 2017Updated 8 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Oct 20, 2023Updated 2 years ago
- awsbe☆17Jun 1, 2022Updated 4 years ago
- Easily download genomes and build BLAST/Bowtie indexes in Python☆22Sep 30, 2022Updated 3 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- Utility for collecting resource-based policies from AWS☆24Sep 17, 2022Updated 3 years ago
- Percentile-normalization method for correcting batch effects in case-control studies☆12Oct 26, 2019Updated 6 years ago
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆23Aug 7, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Documentation for NCBI BLAST AMI☆11Feb 28, 2022Updated 4 years ago
- General low-level API☆50Jul 18, 2022Updated 3 years ago
- A package for creating and managing sample identifiers in comparative -omics datasets.☆23Jan 30, 2017Updated 9 years ago
- Route53 CLI - Get info about your records from the terminal - quickly!☆39Jul 3, 2022Updated 4 years ago
- LAAVA: Long-read AAV Analysis☆13Dec 9, 2025Updated 6 months ago
- 💻 Terminal-like Python input( ) function.☆19Feb 20, 2019Updated 7 years ago
- Open database of scholarly journals☆11Oct 26, 2022Updated 3 years ago
- A thorough, straightforward, un-intimidating introduction to Gaussian processes in NumPy.☆16Jun 12, 2018Updated 8 years ago
- A python wrapper for the benchling api☆49Sep 11, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Rockhead is a set of extension methods for the AWS SDK for .NET Bedrock Runtime client. It provides you strongly typed parameters and res…☆12May 16, 2024Updated 2 years ago
- Read DNA sequences from colourful Microsoft Word documents☆34May 12, 2025Updated last year
- SBOL Designer Project☆31Jun 4, 2021Updated 5 years ago
- **PLEASE NOTE: Due to lack of funding Leaf LIMS is no longer being developed/updated**. Set up Leaf LIMS on your own system.☆31May 22, 2018Updated 8 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆36Aug 4, 2021Updated 4 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated 4 months ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆19Jan 16, 2026Updated 5 months ago