Automating the creation of batch processing workflows in AWS!
☆48Apr 5, 2022Updated 3 years ago
Alternatives and similar repositories for shepard
Users that are interested in shepard are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Efficiently keep track of changes to genomes☆38Jul 22, 2024Updated last year
- Sequencing analysis pipeline☆15Dec 12, 2025Updated 3 months ago
- Ginkgo SARS-CoV-2 synthesis efforts: overviews and data☆13Jun 7, 2020Updated 5 years ago
- Lab notebook for people who like the command line.☆11Mar 6, 2026Updated 2 weeks ago
- Repository of standardized biological experimental data and metadata☆16Jan 9, 2025Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- This project is an example of using AWS Step functions to manage and track a series of AWS Batch jobs in N_TO_N mode.☆15Jan 20, 2026Updated 2 months ago
- A Python molecular biology CAD tool with a dead-simple user interface☆12Dec 8, 2022Updated 3 years ago
- Library for visualising genomic features in Python.☆15May 12, 2017Updated 8 years ago
- ☆15Feb 13, 2026Updated last month
- Repo that we use for non-repo-specific stories and other shared stuff.☆22Apr 2, 2013Updated 12 years ago
- 🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies☆17Jan 23, 2023Updated 3 years ago
- A cool little tool to SSH to EC2 instances using their names☆26Jan 27, 2023Updated 3 years ago
- A quickstart AWS Lambda function code generator. Downloads a template function code file, test harness file, sample SAM deffiniation and …☆22Aug 23, 2024Updated last year
- Short overhangs design for DNA assembly☆15Jun 8, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Web based Registry platform for managing synthetic biological parts☆42May 16, 2024Updated last year
- Python for Command Line Oneliners☆19Jan 5, 2015Updated 11 years ago
- Copy number estimation of highly duplicated sequences☆10Aug 15, 2017Updated 8 years ago
- Just some light reading.☆21Jan 22, 2020Updated 6 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Oct 20, 2023Updated 2 years ago
- awsbe☆17Jun 1, 2022Updated 3 years ago
- Easily download genomes and build BLAST/Bowtie indexes in Python☆22Sep 30, 2022Updated 3 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 7 years ago
- Percentile-normalization method for correcting batch effects in case-control studies☆12Oct 26, 2019Updated 6 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Anno is a variant annotation tool☆24May 18, 2016Updated 9 years ago
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆24Aug 7, 2023Updated 2 years ago
- Friendly data search via Google Docs API☆26Jun 26, 2013Updated 12 years ago
- Documentation for NCBI BLAST AMI☆11Feb 28, 2022Updated 4 years ago
- A package for creating and managing sample identifiers in comparative -omics datasets.☆23Jan 30, 2017Updated 9 years ago
- Route53 CLI - Get info about your records from the terminal - quickly!☆40Jul 3, 2022Updated 3 years ago
- ☆26Dec 2, 2025Updated 3 months ago
- Open database of scholarly journals☆10Oct 26, 2022Updated 3 years ago
- A thorough, straightforward, un-intimidating introduction to Gaussian processes in NumPy.☆16Jun 12, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- A python wrapper for the benchling api☆50Sep 11, 2020Updated 5 years ago
- Rockhead is a set of extension methods for the AWS SDK for .NET Bedrock Runtime client. It provides you strongly typed parameters and res…☆12May 16, 2024Updated last year
- Read DNA sequences from colourful Microsoft Word documents☆34May 12, 2025Updated 10 months ago
- psycopg2 AWS Lambda layers builder☆11Sep 5, 2024Updated last year
- A small, auxiliary index to massively improve parallel fastq parsing☆31Mar 6, 2026Updated 3 weeks ago
- SBOL Designer Project☆31Jun 4, 2021Updated 4 years ago
- **PLEASE NOTE: Due to lack of funding Leaf LIMS is no longer being developed/updated**. Set up Leaf LIMS on your own system.☆31May 22, 2018Updated 7 years ago