Alternatives and similar repositories for shepard:

Users that are interested in shepard are comparing it to the libraries listed below

• awslabs / guidance-for-multi-omics-and-multi-modal-data-integration-and-analysis-on-aws
  This guidance creates a scalable environment in AWS to prepare genomic, clinical, mutation, expression and imaging data for large-scale a…
  ☆24Updated 9 months ago
• aws-samples / aws-batch-architecture-for-alphafold
  ☆38Updated 2 years ago
• aws-samples / genomic-language-model-pretraining-with-healthomics-seq-store
  ☆10Updated this week
• kislyuk / aegea
  Amazon Web Services Operator Interface
  ☆68Updated last month
• BD2KGenomics / cgcloud
  Image and VM management for Jenkins, Spark and Mesos clusters in EC2
  ☆22Updated 4 years ago
• aws-quickstart / quickstart-illumina-dragen
  AWS Quick Start Team
  ☆24Updated 3 months ago
• awslabs / genomics-secondary-analysis-using-aws-step-functions-and-aws-batch
  This solution provides a framework for Next Generation Sequencing (NGS) genomics secondary-analysis pipelines using AWS Step Functions an…
  ☆38Updated last year
• awslabs / amazon-omics-tools
  ☆24Updated last week
• rmarable / ParallelClusterMaker
  ParallelClusterMaker is a command line toolkit for automating the creation and destruction of AWS ParallelCluster stacks.
  ☆16Updated 5 years ago
• aws-samples / amazon-omics-webapp-integrations
  This project contains the webapp sample integrated with AWS HealthOmics, which allows users such as admin and bioinformaticians to operat…
  ☆16Updated last month
• aws-samples / no-tears-cluster
  1-Click Cluster Deployment with AWS ParallelCluster
  ☆29Updated 2 years ago
• ga4gh / workflow-execution-service-schemas
  The WES API is a standard way to run and manage portable workflows.
  ☆82Updated 3 months ago
• DataBiosphere / job-manager
  Job Manager API and UI for interacting with asynchronous batch jobs and workflows.
  ☆26Updated last week
• base2genomics / batchit
  simple jobs submission via command-line for AWS batch
  ☆80Updated 5 years ago
• aws-samples / aws-batch-python-sample
  ☆19Updated 4 years ago
• 4dn-dcic / tibanna
  Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…
  ☆70Updated last month
• Mizzou-CBMI / COSMOS2
  Python Scientific Pipeline Management System
  ☆71Updated last year
• churchlab / millstone
  Genome engineering and analysis software
  ☆47Updated 2 years ago
• wheretrue / fasql
  DuckDB Extension for reading and writing FASTA and FASTQ Files
  ☆20Updated last year
• Bayer-Group / BayerCLAW
  BayerCLAW workflow orchestration system for AWS
  ☆21Updated 6 months ago
• galaxyproject / ansible-galaxy-extras
  (Deprecated) Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproje…
  ☆11Updated 2 months ago
• refinery-platform / refinery-platform
  The Refinery Platform is a data management, analysis and visualization system for bioinformatics and computational biology applications. …
  ☆103Updated 2 years ago
• galaxyproject / cloudlaunch
  Easily launch cloud applications.
  ☆42Updated last month
• awslabs / aws-parallelcluster-pipeline-gatk-quick-start
  ☆15Updated 4 years ago
• hms-dbmi / hail-on-AWS-spot-instances
  An option to spin cost effective EMR clusters in AWS with Hail and JupyterNotebook installed
  ☆16Updated 4 years ago
• galaxyproject / usegalaxy-playbook
  Ansible Playbook for usegalaxy.org
  ☆31Updated this week
• genepattern / genepattern-notebook
  Platform for integrating genomic analysis with Jupyter Notebooks.
  ☆44Updated 5 months ago