JBEI / edd
Repository of standardized biological experimental data and metadata
☆15Updated 2 months ago
Alternatives and similar repositories for edd:
Users that are interested in edd are comparing it to the libraries listed below
- Web based Registry platform for managing synthetic biological parts☆41Updated 10 months ago
- CBMPy is a Python based platform for constraint based modelling and analysis.☆19Updated 10 months ago
- Toolkit for Modelling and Simulation of Gene Expressions and Metabolism☆12Updated last month
- DNA overhang misannealing data for Python☆13Updated 2 years ago
- ☆11Updated 5 years ago
- An Open-Source web application to plan and document cloning and genome engineering☆22Updated this week
- Enzyme-constrained genome-scale models in python☆25Updated last year
- Find common blocks and differences between DNA sequences☆41Updated 2 years ago
- ☆22Updated 4 years ago
- ☆13Updated 6 years ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆41Updated 3 weeks ago
- 🤖 Python biolab automation library: parsers, report generators, picklist simulators, and more☆43Updated 5 months ago
- An amino acid sequence annotator☆14Updated 2 years ago
- Convert genbank files to a swath of other formats☆16Updated last year
- A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.☆18Updated last week
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆25Updated 6 years ago
- Quickly find and score consensus between metabolite identifications and gene annotations☆17Updated 3 months ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- Python package for creating, calibrating and simulating RBA models☆12Updated last year
- A Python package for Biopython that gives feature annotations from GenBank records a new and better life☆14Updated 8 years ago
- ReFramed: metabolic modeling package☆58Updated 7 months ago
- A Pure-Python parser of HMMER3 output☆17Updated 5 months ago
- Python package for building and analyzing models using ModelSEED☆22Updated 2 weeks ago
- a DNA assembly library☆20Updated last year
- Nanopore Plasmid Sequencing☆32Updated last year
- A web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations☆14Updated last year
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆14Updated last year
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated last year
- PaperBLAST: find papers about a protein or its homologs☆39Updated 2 months ago
- ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints☆16Updated 7 months ago