PGScatalog / pgsc_calcLinks
The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
☆145Updated last month
Alternatives and similar repositories for pgsc_calc
Users that are interested in pgsc_calc are comparing it to the libraries listed below
Sorting:
- A tutorial on how to run basic polygenic risk score analysis☆81Updated 2 years ago
- ☆98Updated 3 years ago
- PolyFun (POLYgenic FUNctionally-informed fine-mapping)☆124Updated 9 months ago
- Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF☆156Updated 3 weeks ago
- Rare variant test software for next generation sequencing data☆140Updated 3 years ago
- ☆180Updated 2 years ago
- A tool to build a website to browse hundreds or thousands of GWAS.☆185Updated last week
- Ultrafast GPU-enabled QTL mapper☆190Updated 2 months ago
- Cross-population polygenic prediction☆89Updated 9 months ago
- Sequence kernel association test (SKAT)☆52Updated last month
- ☆194Updated 3 years ago
- regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.☆229Updated 3 months ago
- Development for SAIGE and SAIGE-GENE(+)☆82Updated this week
- Linear mixed model for genomic analyses.☆107Updated 4 years ago
- A factor analysis package☆101Updated 13 years ago
- Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool☆174Updated 9 months ago
- Analyses conducting GWAS across the UKBB diverse superpopulations☆53Updated 4 months ago
- An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline☆66Updated 5 months ago
- Copy number calling and variant classification using targeted short read sequencing☆140Updated 3 weeks ago
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆68Updated 11 months ago
- Hail helper functions for the gnomAD project and Translational Genomics Group☆96Updated this week
- methods for functional summary-based imputation☆88Updated 3 years ago
- A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores☆199Updated last year
- Check strandedness of RNA-Seq fastq files☆125Updated 3 years ago
- Codebook from my GWAS cookbook☆193Updated 3 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆117Updated 7 months ago
- Tools to work with GWAS-VCF summary statistics files☆123Updated 3 weeks ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆224Updated last year
- Easily download publicly available GWAS summary statistics.☆76Updated last year
- GWAS Pipeline for H3Africa☆111Updated 3 months ago