Alternatives and similar repositories for pgsc_calc

Users that are interested in pgsc_calc are comparing it to the libraries listed below

• zhanxw / rvtests
  Rare variant test software for next generation sequencing data
  ☆140Updated 3 years ago
• freeseek / gtc2vcf
  Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF
  ☆156Updated last week
• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆122Updated 8 months ago
• bvilhjal / ldpred
  ☆98Updated 3 years ago
• broadinstitute / tensorqtl
  Ultrafast GPU-enabled QTL mapper
  ☆189Updated 2 months ago
• konradjk / loftee
  ☆180Updated 2 years ago
• PMBio / peer
  A factor analysis package
  ☆100Updated 13 years ago
• limix / limix
  Linear mixed model for genomic analyses.
  ☆105Updated 4 years ago
• molgenis / systemsgenetics
  Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool
  ☆174Updated 8 months ago
• statgen / pheweb
  A tool to build a website to browse hundreds or thousands of GWAS.
  ☆185Updated last year
• quinlan-lab / sllobs-biostats
  ☆72Updated 3 years ago
• im3sanger / dndscv
  dN/dS methods to quantify selection in cancer and somatic evolution
  ☆223Updated 3 months ago
• bmvdgeijn / WASP
  WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery
  ☆105Updated 4 years ago
• getian107 / PRScsx
  Cross-population polygenic prediction
  ☆88Updated 9 months ago
• kvittingseerup / IsoformSwitchAnalyzeR
  An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
  ☆117Updated 6 months ago
• lima1 / PureCN
  Copy number calling and variant classification using targeted short read sequencing
  ☆138Updated 4 months ago
• weizhouUMICH / SAIGE
  ☆193Updated 3 years ago
• choishingwan / PRS-Tutorial
  A tutorial on how to run basic polygenic risk score analysis
  ☆80Updated 2 years ago
• freeseek / score
  Tools to work with GWAS-VCF summary statistics files
  ☆123Updated last week
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆51Updated 3 weeks ago
• davidaknowles / leafcutter
  Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …
  ☆224Updated last year
• xihaoli / STAARpipeline
  An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
  ☆66Updated 5 months ago
• saigegit / SAIGE
  Development for SAIGE and SAIGE-GENE(+)
  ☆81Updated last week
• h3abionet / h3agwas
  GWAS Pipeline for H3Africa
  ☆111Updated 3 months ago
• rgcgithub / regenie
  regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.
  ☆224Updated 2 months ago
• JoniColeman / gwas_scripts
  Codebook from my GWAS cookbook
  ☆193Updated 3 years ago
• davetang / learning_vcf_file
  Learning the Variant Call Format
  ☆144Updated 3 weeks ago
• CRG-Barcelona / bwtool
  A tool for bigWig files.
  ☆119Updated 7 years ago
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆52Updated 3 months ago
• broadinstitute / pyqtl
  Collection of analysis tools for quantitative trait loci
  ☆58Updated last week