NGSNGS: Next generation simulator for next generation sequencing data
☆56Nov 27, 2024Updated last year
Alternatives and similar repositories for NGSNGS
Users that are interested in NGSNGS are comparing it to the libraries listed below
Sorting:
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆57Aug 6, 2023Updated 2 years ago
- Simulate mutations in genomes☆15Jun 15, 2020Updated 5 years ago
- Chimera: A Versatile Metagenomic Classification Tool☆20Feb 1, 2026Updated last month
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Dec 31, 2025Updated 2 months ago
- Validation of sycnmers compared to minimizers☆11May 10, 2025Updated 9 months ago
- ☆11Feb 12, 2026Updated 3 weeks ago
- Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis☆24Dec 15, 2025Updated 2 months ago
- Portable database of microhaplotype marker and allele frequency data☆11Oct 2, 2025Updated 5 months ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆16Jan 12, 2026Updated last month
- A simple tool to calculate metrics from a BAM file and filter references with uneven coverages☆22Jan 29, 2026Updated last month
- Visualize microbial evolution at the SNP level!☆15Aug 12, 2025Updated 6 months ago
- Code repository for the HAYSTAC pipeline☆14Oct 25, 2024Updated last year
- Read visualizer for structural variants☆84Aug 18, 2018Updated 7 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆24Feb 6, 2023Updated 3 years ago
- TAXnomic Profile Aggregation and STAndardisation☆42Nov 18, 2025Updated 3 months ago
- Genotype likelihood simulator for VCF/BCF files☆16May 7, 2025Updated 9 months ago
- ♥ Efficient Estimation of Evolutionary Distances☆47Feb 15, 2026Updated 2 weeks ago
- MetaProFi is a bloom filter based tool for storing and querying sequence data for accurate identification of functionally relevant geneti…☆12Apr 14, 2022Updated 3 years ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Aug 7, 2023Updated 2 years ago
- Pathoscope: Species identification and strain attribution with unassembled sequencing data☆60May 23, 2019Updated 6 years ago
- A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster to…☆174Feb 27, 2026Updated last week
- A set of tools to annotate VCF files with expression and readcount data☆30Jan 30, 2026Updated last month
- visualize CNV data from targeted capture based sequencing data☆34May 10, 2021Updated 4 years ago
- Automatically design multiplex PCR primer pairs for diverse templates☆31May 23, 2024Updated last year
- The Modular Aligner and The Modular SV Caller☆46Jul 18, 2023Updated 2 years ago
- Pneumococcal Capsular Typing tool for NGS data☆18Apr 6, 2021Updated 4 years ago
- alignment and assembly free☆14May 29, 2023Updated 2 years ago
- Structural variant merging tool☆57Aug 23, 2024Updated last year
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆53Feb 28, 2026Updated last week
- IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split …☆16Aug 22, 2023Updated 2 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated 9 months ago
- Drug Resistance Prediction with Reference Graphs☆21Oct 23, 2025Updated 4 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jan 31, 2025Updated last year
- Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletion…☆26Apr 25, 2018Updated 7 years ago
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆459Feb 13, 2026Updated 3 weeks ago
- Aligns short reads using dynamic seed size with strobemers☆192Feb 27, 2026Updated last week
- Find and visualize rearrangements in DNA sequences☆55Dec 1, 2025Updated 3 months ago
- for visual evaluation of read support for structural variation☆56Jun 4, 2024Updated last year