Variant calling pipeline designed for Q20+ ONT long-reads
☆15Sep 14, 2026Updated 3 weeks ago
Alternatives and similar repositories for dviont
Users that are interested in dviont are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆38Updated this week
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆22Sep 9, 2026Updated last month
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated 4 months ago
- Fast and space-efficient taxonomic classification of long reads☆46Jul 16, 2026Updated 2 months ago
- A tool to detect acquired AMR genes directly from long read sequencing data.☆28Jan 31, 2026Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A rapid, accurate and flexible (core-genome) multi-locus sequence typing (MLST) allele caller.☆34Sep 24, 2026Updated 2 weeks ago
- ☆16Jul 24, 2026Updated 2 months ago
- A Python package to update the MLST database for the mlst tool.☆33Jul 22, 2026Updated 2 months ago
- All The Bacteria CLI — query 3.2M bacterial genomes (AMR, MLST, assemblies, metadata) from the terminal☆37Sep 2, 2026Updated last month
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated 3 months ago
- TAXnomic Profile Aggregation and STAndardisation☆43May 2, 2026Updated 5 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆16Jun 26, 2018Updated 8 years ago
- ☆10Jun 9, 2025Updated last year
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- Population analysis PIPEline 🛠🧬☆28Mar 2, 2026Updated 7 months ago
- AMR/VF LGT focused bacterial genomics analysis workflow☆28Feb 19, 2026Updated 7 months ago
- Reorients assembled microbial sequences☆145Jun 30, 2026Updated 3 months ago
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated 2 months ago
- µbinfie blog☆19Jul 21, 2025Updated last year
- Extract subsets of ONT (Nanopore) reads based on time☆26Sep 12, 2024Updated 2 years ago
- Variant call verification☆19May 12, 2025Updated last year
- Utility to alias and dealias pango lineages☆23Dec 18, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆91Sep 9, 2026Updated last month
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆38Jun 4, 2026Updated 4 months ago
- ☆30Mar 6, 2025Updated last year
- software to identify primers that can distinguish genomes☆20Aug 31, 2026Updated last month
- A pipeline for bioinformatics analysis of bacterial genomes☆33Updated this week
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Feb 12, 2026Updated 7 months ago
- Plasmid analysis using rearrangement distances☆56Jul 19, 2026Updated 2 months ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25May 30, 2023Updated 3 years ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆48Sep 9, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- libstrbuf: A powerful string library for C☆18Oct 15, 2016Updated 9 years ago
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆25Apr 30, 2026Updated 5 months ago
- Nextflow pipeline for generation of phylogenetic trees to be visualized in Auspice.☆11Jan 6, 2026Updated 9 months ago
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 3 years ago
- Genome size estimation from long read overlaps☆98Sep 8, 2026Updated last month
- Bifrost graph gene caller.☆102Aug 31, 2026Updated last month
- A high-performance in-silico PCR tool for primer matching and product extraction from FASTA and GenBank sequences.☆19Feb 25, 2026Updated 7 months ago