Kainmueller-Lab / PatchPerPixLinks
official implementation of the PatchPerPix instance segmentation method
☆33Updated last year
Alternatives and similar repositories for PatchPerPix
Users that are interested in PatchPerPix are comparing it to the libraries listed below
Sorting:
- PyTorch implementation of SPOCO☆32Updated 10 months ago
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆114Updated last year
- ☆25Updated 4 years ago
- Weakly-Supervised Cell Tracking via Backward-and-Forward Propagation, in ECCV 2020☆11Updated 4 years ago
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆31Updated 2 years ago
- The mutex watershed for image segmentation.☆67Updated 4 years ago
- simple package for augmentation of n-dimensional arrays☆32Updated last year
- Instance segmentation via deep pixel embedding☆23Updated 4 years ago
- 3 different deep learning approaches to segment nuclei and identify associated markers☆8Updated 3 years ago
- Analysis of results of the Data Science Bowl 2018☆21Updated 4 years ago
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆22Updated 2 years ago
- Pytorch implementation of the LearnedRandomWalker module☆29Updated 4 years ago
- ☆20Updated 4 years ago
- MPM: Joint Representation of Motion and Position Map for Cell Tracking☆40Updated 3 years ago
- This code was submitted to Cell Tracking Challenge, ISBI 2020.☆14Updated 4 years ago
- Distributed segmentation for bio-image-analysis☆38Updated 3 weeks ago
- Utils and convenience functions for large-scale bio-image analysis.☆56Updated last week
- [MICCAI 2019] Multi-scale Cell Instance Segmentation with Keypoint Graph based Bounding Boxes☆84Updated 5 years ago
- ☆17Updated 7 years ago
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).☆11Updated 3 years ago
- Cell tracking using TensorFlow and BayesianTracker☆22Updated 3 years ago
- For cell segmentation and tracking.☆36Updated 5 years ago
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆111Updated this week
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆96Updated this week
- MALIS structured loss function for supervised learning of segmentation and clustering☆18Updated last year
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …☆33Updated this week
- ☆32Updated 2 years ago
- Simple watershed and agglomeration library for affinity graphs.☆22Updated 6 months ago
- Notebooks for VoidSeg☆16Updated 5 years ago
- Fill holes in binary 2D & 3D images fast.☆21Updated 3 months ago