official implementation of the PatchPerPix instance segmentation method
☆35Jun 27, 2023Updated 2 years ago
Alternatives and similar repositories for PatchPerPix
Users that are interested in PatchPerPix are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Flood filling networks for segmenting electron microscopy of neural tissue☆25Dec 26, 2022Updated 3 years ago
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆126Feb 14, 2024Updated 2 years ago
- Simple watershed and agglomeration library for affinity graphs.☆29Sep 18, 2025Updated 7 months ago
- ☆22Jan 6, 2026Updated 3 months ago
- PyTorch implementation of SPOCO☆33Aug 3, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Evaluation of Deep Learning Strategies for Nucleus Segmentation in Fluorescence Images☆14Feb 4, 2019Updated 7 years ago
- A curated list of resources for 3D segmentation of neurites in EM images☆57Mar 11, 2024Updated 2 years ago
- Official implementation, datasets and trained models of "SegNeuron: 3D Neuron Instance Segmentation in Any EM Volume with a Generalist Mo…☆21Mar 29, 2026Updated last month
- Utils and convenience functions for large-scale bio-image analysis.☆64Apr 9, 2026Updated 3 weeks ago
- Lab for quantitative bioimage analysis experiments in Python☆19Feb 16, 2026Updated 2 months ago
- Create movies from series of key-frames in napari.☆38May 24, 2021Updated 4 years ago
- Multi-Object Tracking with Integer Linear Equations☆39Apr 14, 2026Updated 2 weeks ago
- The mutex watershed for image segmentation.☆67May 6, 2021Updated 4 years ago
- ☆11Jul 20, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A library to facilitate machine learning on multi-dimensional images.☆89Apr 22, 2026Updated last week
- QuPath extension for Cellsparse☆19May 6, 2025Updated 11 months ago
- Software for segmentation, tracking and analysis of cells in microscope image sequences.☆43Apr 7, 2024Updated 2 years ago
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆19Apr 18, 2026Updated last week
- Block-wise operations for large nD volumes☆46Apr 23, 2026Updated last week
- Superhuman Accuracy on the SNEMI3D Connectomics Challenge☆14Feb 28, 2018Updated 8 years ago
- Segment images utilizing pre-trained neural networks as feature extractors☆52Apr 8, 2026Updated 3 weeks ago
- ☆16Oct 3, 2023Updated 2 years ago
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Oct 30, 2017Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Analysis of results of the Data Science Bowl 2018☆22Jun 16, 2020Updated 5 years ago
- Python module for registering and fusing multi-view microscopy data☆24Mar 8, 2025Updated last year
- simple package for augmentation of n-dimensional arrays☆34Aug 10, 2023Updated 2 years ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Apr 23, 2026Updated last week
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 4 months ago
- Semi-Supervised Neuron Segmentation via Reinforced Consistency Learning☆32May 28, 2022Updated 3 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Feb 9, 2020Updated 6 years ago
- ☆27Jun 17, 2025Updated 10 months ago
- Cell tracking using TensorFlow and BayesianTracker☆22Jan 17, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- PyTorch Connectomics: segmentation toolbox for EM connectomics☆191Updated this week
- ☆24Aug 27, 2020Updated 5 years ago
- Particle tracking by solving linear assignment problem.☆64Apr 1, 2026Updated 3 weeks ago
- Pytorch Implement of Boundary-assisted Region Proposal Networks for Nucleus Segmentation☆18Jun 8, 2021Updated 4 years ago
- Flood-Filling Networks for instance segmentation in 3d volumes.☆347Apr 9, 2026Updated 3 weeks ago
- Compilation of information and code bases related to open-source trackers for C. elegans☆14Apr 23, 2025Updated last year
- Felzenszwalb and Huttenlocher's graph-based image segmentation algorithm, extended to use depth data in various ways☆11Oct 4, 2012Updated 13 years ago