Alternatives and similar repositories for PatchPerPix

Users that are interested in PatchPerPix are comparing it to the libraries listed below

• kreshuklab / spoco
  PyTorch implementation of SPOCO
  ☆32Updated 11 months ago
• juglab / EmbedSeg
  Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images
  ☆116Updated last year
• funalab / QCANet
  Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development
  ☆31Updated 2 years ago
• sciai-lab / mutex-watershed
  The mutex watershed for image segmentation.
  ☆67Updated 4 years ago
• naivete5656 / WSCTBFP
  Weakly-Supervised Cell Tracking via Backward-and-Forward Propagation, in ECCV 2020
  ☆11Updated 4 years ago
• trasse / OpSeF-IV
  ☆25Updated 4 years ago
• looooongChen / instance_segmentation_with_pixel_embeddings
  Instance segmentation via deep pixel embedding
  ☆23Updated 4 years ago
• klasma / BaxterAlgorithms
  Software for segmentation, tracking and analysis of cells in microscope image sequences.
  ☆40Updated last year
• JunyaHayashida / MPM
  MPM: Joint Representation of Motion and Position Map for Cell Tracking
  ☆40Updated 3 years ago
• funkey / mala
  Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).
  ☆11Updated 4 years ago
• divelab / deepem3d
  ☆17Updated 7 years ago
• stardist / augmend
  simple package for augmentation of n-dimensional arrays
  ☆33Updated last year
• tpecot / NucleiSegmentationAndMarkerIDentification
  3 different deep learning approaches to segment nuclei and identify associated markers
  ☆8Updated 3 years ago
• zudi-lin / pytorch_connectomics
  PyTorch Connectomics: segmentation toolbox for EM connectomics
  ☆179Updated last month
• AntonotnaWang / 3DCellSeg
  Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…
  ☆22Updated 2 years ago
• s-shailja / ucsb_ctc
  This code was submitted to Cell Tracking Challenge, ISBI 2020.
  ☆14Updated 4 years ago
• kreshuklab / plant-seg
  A tool for cell instance aware segmentation in densely packed 3D volumetric images
  ☆114Updated this week
• abnan / DRMIME
  DRMIME - Differentiable Mutual Information and Matrix Exponential for Multi-Resolution Image Registration
  ☆46Updated 5 years ago
• sciai-lab / pytorch-LearnedRandomWalker
  Pytorch implementation of the LearnedRandomWalker module
  ☆29Updated 4 years ago
• janelia-cellmap / cellmap-segmentation-challenge
  Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …
  ☆33Updated 3 weeks ago
• jvzonlab / OrganoidTracker
  Cell tracker designed for tracking intestinal organoids
  ☆26Updated this week
• urakubo / UNI-EM
  A unified environment for DNN-based automated segmentation of neuronal EM images
  ☆37Updated 10 months ago
• ilastik / nature_methods_multicut_pipeline
  ☆21Updated 4 years ago
• yijingru / KG_Instance_Segmentation
  [MICCAI 2019] Multi-scale Cell Instance Segmentation with Keypoint Graph based Bounding Boxes
  ☆84Updated 5 years ago
• funkelab / lsd
  🌈
  ☆59Updated 3 months ago
• constantinpape / cluster_tools
  Distributed segmentation for bio-image-analysis
  ☆38Updated 2 months ago
• SAIL-GuoLab / Cell_Segmentation_and_Tracking
  For cell segmentation and tracking.
  ☆36Updated 5 years ago
• bchidest / CFNet
  ☆26Updated 6 years ago
• abailoni / GASP
  Generalized algorithm for agglomerative clustering of signed graphs
  ☆13Updated 3 years ago
• funkelab / linajea
  ☆18Updated 2 years ago