Kainmueller-Lab / PatchPerPixLinks
official implementation of the PatchPerPix instance segmentation method
☆35Updated 2 years ago
Alternatives and similar repositories for PatchPerPix
Users that are interested in PatchPerPix are comparing it to the libraries listed below
Sorting:
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆127Updated last year
- PyTorch implementation of SPOCO☆32Updated last year
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆32Updated 2 years ago
- ☆17Updated 8 years ago
- ☆24Updated 5 years ago
- The mutex watershed for image segmentation.☆67Updated 4 years ago
- PyTorch Connectomics: segmentation toolbox for EM connectomics☆188Updated this week
- ☆22Updated last month
- 🌈☆67Updated 3 months ago
- Open source Python library for building bioimage analysis pipelines☆188Updated this week
- simple package for augmentation of n-dimensional arrays☆34Updated 2 years ago
- Simple watershed and agglomeration library for affinity graphs.☆27Updated 4 months ago
- Instance segmentation via deep pixel embedding☆23Updated 5 years ago
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆124Updated this week
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆22Updated 2 years ago
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …☆39Updated this week
- [MICCAI 2019] Multi-scale Cell Instance Segmentation with Keypoint Graph based Bounding Boxes☆85Updated 6 years ago
- Utils and convenience functions for large-scale bio-image analysis.☆60Updated last month
- Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.☆30Updated 5 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- ☆32Updated 6 months ago
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).☆11Updated 4 years ago
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆115Updated this week
- AICS ML Segmentation (One-Way) Mirror☆27Updated 4 years ago
- Tensorflow and Pytorch Version of Malis Loss☆17Updated 5 years ago
- Cell tracker designed for tracking intestinal organoids☆33Updated last week
- Weakly-Supervised Cell Tracking via Backward-and-Forward Propagation, in ECCV 2020☆11Updated 5 years ago
- Cloud-based data annotation tools for biological images☆84Updated last year
- Omnipose: a high-precision solution for morphology-independent cell segmentation☆139Updated this week
- SplineDist: Automated Cell Segmentation with Spline Curves☆70Updated last year