Alternatives and similar repositories for PatchPerPix

Users that are interested in PatchPerPix are comparing it to the libraries listed below

• kreshuklab / spoco
  PyTorch implementation of SPOCO
  ☆32Updated 10 months ago
• juglab / EmbedSeg
  Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images
  ☆114Updated last year
• trasse / OpSeF-IV
  ☆25Updated 4 years ago
• naivete5656 / WSCTBFP
  Weakly-Supervised Cell Tracking via Backward-and-Forward Propagation, in ECCV 2020
  ☆11Updated 4 years ago
• funalab / QCANet
  Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development
  ☆31Updated 2 years ago
• sciai-lab / mutex-watershed
  The mutex watershed for image segmentation.
  ☆67Updated 4 years ago
• stardist / augmend
  simple package for augmentation of n-dimensional arrays
  ☆32Updated last year
• looooongChen / instance_segmentation_with_pixel_embeddings
  Instance segmentation via deep pixel embedding
  ☆23Updated 4 years ago
• tpecot / NucleiSegmentationAndMarkerIDentification
  3 different deep learning approaches to segment nuclei and identify associated markers
  ☆8Updated 3 years ago
• carpenterlab / 2019_caicedo_dsb
  Analysis of results of the Data Science Bowl 2018
  ☆21Updated 4 years ago
• AntonotnaWang / 3DCellSeg
  Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…
  ☆22Updated 2 years ago
• sciai-lab / pytorch-LearnedRandomWalker
  Pytorch implementation of the LearnedRandomWalker module
  ☆29Updated 4 years ago
• ilastik / nature_methods_multicut_pipeline
  ☆20Updated 4 years ago
• JunyaHayashida / MPM
  MPM: Joint Representation of Motion and Position Map for Cell Tracking
  ☆40Updated 3 years ago
• s-shailja / ucsb_ctc
  This code was submitted to Cell Tracking Challenge, ISBI 2020.
  ☆14Updated 4 years ago
• constantinpape / cluster_tools
  Distributed segmentation for bio-image-analysis
  ☆38Updated 3 weeks ago
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆56Updated last week
• yijingru / KG_Instance_Segmentation
  [MICCAI 2019] Multi-scale Cell Instance Segmentation with Keypoint Graph based Bounding Boxes
  ☆84Updated 5 years ago
• divelab / deepem3d
  ☆17Updated 7 years ago
• funkey / mala
  Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).
  ☆11Updated 3 years ago
• quantumjot / CellTracking
  Cell tracking using TensorFlow and BayesianTracker
  ☆22Updated 3 years ago
• SAIL-GuoLab / Cell_Segmentation_and_Tracking
  For cell segmentation and tracking.
  ☆36Updated 5 years ago
• kreshuklab / plant-seg
  A tool for cell instance aware segmentation in densely packed 3D volumetric images
  ☆111Updated this week
• constantinpape / torch-em
  Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
  ☆96Updated this week
• TuragaLab / malis
  MALIS structured loss function for supervised learning of segmentation and clustering
  ☆18Updated last year
• janelia-cellmap / cellmap-segmentation-challenge
  Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …
  ☆33Updated this week
• AllenCell / aics-ml-segmentation
  ☆32Updated 2 years ago
• funkey / waterz
  Simple watershed and agglomeration library for affinity graphs.
  ☆22Updated 6 months ago
• juglab / VoidSeg
  Notebooks for VoidSeg
  ☆16Updated 5 years ago
• seung-lab / fill_voids
  Fill holes in binary 2D & 3D images fast.
  ☆21Updated 3 months ago