official implementation of the PatchPerPix instance segmentation method
☆35Jun 27, 2023Updated 2 years ago
Alternatives and similar repositories for PatchPerPix
Users that are interested in PatchPerPix are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17Feb 3, 2018Updated 8 years ago
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).☆11Jun 23, 2021Updated 4 years ago
- Flood filling networks for segmenting electron microscopy of neural tissue☆25Dec 26, 2022Updated 3 years ago
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆127Feb 14, 2024Updated 2 years ago
- Simple watershed and agglomeration library for affinity graphs.☆30Sep 18, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Volumetric data obtained with focused ion beam combined with scanning electron microscopy (FIB-SEM) and labels for mitochondria, endolyso…☆14May 15, 2023Updated 3 years ago
- ☆22Jan 6, 2026Updated 5 months ago
- PyTorch implementation of SPOCO☆33Aug 3, 2024Updated last year
- Evaluation of Deep Learning Strategies for Nucleus Segmentation in Fluorescence Images☆14Feb 4, 2019Updated 7 years ago
- A curated list of resources for 3D segmentation of neurites in EM images☆57Mar 11, 2024Updated 2 years ago
- Official implementation, datasets and trained models of "SegNeuron: 3D Neuron Instance Segmentation in Any EM Volume with a Generalist Mo…☆23Jun 1, 2026Updated last week
- Interprocess environment manager 🧊☆13May 11, 2026Updated 3 weeks ago
- 🌈☆70Oct 10, 2025Updated 7 months ago
- Utility functions for large-scale bio-image analysis.☆64Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Create movies from series of key-frames in napari.☆38May 24, 2021Updated 5 years ago
- Multi-Object Tracking with Integer Linear Equations☆39May 7, 2026Updated last month
- The mutex watershed for image segmentation.☆68May 6, 2021Updated 5 years ago
- ☆13Jul 20, 2022Updated 3 years ago
- ☆11Jul 20, 2023Updated 2 years ago
- A library to facilitate machine learning on multi-dimensional images.☆90Jun 1, 2026Updated last week
- QuPath extension for Cellsparse☆19May 6, 2025Updated last year
- Software for segmentation, tracking and analysis of cells in microscope image sequences.☆43Apr 7, 2024Updated 2 years ago
- Block-wise task scheduling for large nD volumes.☆32May 4, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆18Oct 12, 2019Updated 6 years ago
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆19Apr 18, 2026Updated last month
- ☆10Jan 7, 2020Updated 6 years ago
- Block-wise operations for large nD volumes☆45Updated this week
- Superhuman Accuracy on the SNEMI3D Connectomics Challenge☆14Feb 28, 2018Updated 8 years ago
- Tool for graph-based image segmentation and analysis☆22Nov 12, 2017Updated 8 years ago
- ☆16Oct 3, 2023Updated 2 years ago
- Analysis of results of the Data Science Bowl 2018☆22Jun 16, 2020Updated 5 years ago
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Oct 30, 2017Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Python module for registering and fusing multi-view microscopy data☆24Mar 8, 2025Updated last year
- Google Colab notebook for Cellpose☆11Aug 21, 2025Updated 9 months ago
- simple package for augmentation of n-dimensional arrays☆34Aug 10, 2023Updated 2 years ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆31May 28, 2026Updated last week
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 6 months ago
- Semi-Supervised Neuron Segmentation via Reinforced Consistency Learning☆32May 28, 2022Updated 4 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Feb 9, 2020Updated 6 years ago