mani2012 / BatchQCLinks
Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.
☆35Updated 2 years ago
Alternatives and similar repositories for BatchQC
Users that are interested in BatchQC are comparing it to the libraries listed below
Sorting:
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 6 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- A small R package to make sequencing read coverage plots in R.☆40Updated last month
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Transcript quantification import with automatic metadata detection☆67Updated last week
- DRAGEN Tumor/Normal workflow post-processing☆24Updated 2 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last month
- Flexible Bayesian inference of mutational signatures☆37Updated 2 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 8 years ago
- Tool for RNA-Seq analysis.☆39Updated 3 years ago
- Make rapid visualizations of RNA-seq data in R☆19Updated 2 months ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 8 months ago
- Tools for visualizing genomics data☆69Updated 4 years ago
- R package wrapping bedtools☆44Updated 8 months ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- HOT regions paper☆11Updated 6 years ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆31Updated 8 months ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated 2 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 7 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆29Updated 10 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 7 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- ☆33Updated 3 years ago
- DriverPower☆26Updated 10 months ago