mani2012 / BatchQC
Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.
☆35Updated last year
Alternatives and similar repositories for BatchQC:
Users that are interested in BatchQC are comparing it to the libraries listed below
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- R package wrapping bedtools☆39Updated 3 weeks ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Merge fastq files split over lanes☆20Updated 7 years ago
- Tool for RNA-Seq analysis.☆38Updated 3 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- Summer school course materials collection☆25Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆28Updated last month
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆28Updated 9 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 6 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆20Updated 7 years ago
- a set of NGS pipelines☆24Updated this week
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- ☆29Updated 5 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 6 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- Transcript quantification import with automatic metadata detection☆67Updated 2 months ago
- An R interface to the MEME Suite☆50Updated 6 months ago
- ☆33Updated 2 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- An R for fast and flexible DNA methylation analysis☆32Updated 8 months ago
- Statistical power studies for multi-omics experiments.☆31Updated 2 months ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Tutorial to reproduce the analysis of Peixoto et al. (2015)☆9Updated 9 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆28Updated 3 weeks ago