gsufsort: building suffix arrays, LCP-arrays and BWTs for string collections [AMB 2020]
☆27Feb 16, 2025Updated last year
Alternatives and similar repositories for gsufsort
Users that are interested in gsufsort are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Inducing enhanced suffix arrays for string collections [DCC'16, TCS 2017]☆29Dec 2, 2025Updated 9 months ago
- Generalized enhanced suffix array construction in external memory [CPM'13, AMB 2017]☆17Aug 9, 2021Updated 5 years ago
- A cheatsheet for most common Stringology tasks☆14Apr 14, 2021Updated 5 years ago
- A lightweight suffix-sorting library enhanced with LCP construction☆13Mar 26, 2020Updated 6 years ago
- BWT Text Indexing Library: a set of tools to work with BWT-based text indexes☆25Apr 25, 2022Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Optimal suffix sorting and LCP array construction for constant alphabets [IPL 2017]☆10Aug 17, 2018Updated 8 years ago
- External memory suffix array construction using inducing☆12Jul 27, 2020Updated 6 years ago
- Implementation of eBWT using Prefix-free parse (PFP)☆14Jul 14, 2025Updated last year
- Online construction of run-length BWT (RLBWT) and r-index. Plus, online LZ77 parsing based on RLBWT.☆14May 11, 2018Updated 8 years ago
- A space-efficient compressor based on the Re-Pair grammar☆13Apr 6, 2017Updated 9 years ago
- Run-length compressed BWT with LZ77 sampled suffix array☆10Apr 25, 2022Updated 4 years ago
- A simple C++11 memory monitor☆14Dec 17, 2015Updated 10 years ago
- Finding Maximal Exact Matches (MEMs) using a Sampled LCP Array☆10Mar 7, 2024Updated 2 years ago
- Wavelet tree based on a fixed block boosting technique☆17May 18, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Mar 6, 2023Updated 3 years ago
- The libsais library provides fast linear-time construction of suffix array (SA), generalized suffix array (GSA), longest common prefix (L…☆252Sep 10, 2025Updated 11 months ago
- A python toolkit for building and querying multi-string BWTs☆27Mar 2, 2017Updated 9 years ago
- Parallel Lightweight Suffix Array Algorithm.☆20Dec 28, 2016Updated 9 years ago
- C++20 Generalized Suffix Tree implementation☆13Oct 23, 2022Updated 3 years ago
- A lightweight suffix-sorting library☆414Mar 25, 2020Updated 6 years ago
- Small library of string algorithms☆21Feb 9, 2023Updated 3 years ago
- Fast Neighbor-Joining and other distance-based methods for phylogenetics☆16Jun 21, 2024Updated 2 years ago
- Paper Collection for Stringologists☆17Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- MEM mapper prototype