felipelouza / gsufsortLinks
gsufsort: building suffix arrays, LCP-arrays and BWTs for string collections [AMB 2020]
☆27Updated 10 months ago
Alternatives and similar repositories for gsufsort
Users that are interested in gsufsort are comparing it to the libraries listed below
Sorting:
- Inducing enhanced suffix arrays for string collections [DCC'16, TCS 2017]☆26Updated 3 weeks ago
- Implementation of eBWT using Prefix-free parse (PFP)☆14Updated 5 months ago
- Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)☆56Updated last year
- Efficient construction of the BWT using string compression☆20Updated 6 months ago
- An optimal space run-length Burrows-Wheeler transform full-text index☆66Updated 2 years ago
- A tool for merging large BWTs☆25Updated 5 years ago
- Incremental construction of FM-index for DNA sequences☆72Updated last year
- R-Index-F Library for Pattern Matching☆12Updated last year
- A cheatsheet for most common Stringology tasks☆14Updated 4 years ago
- vector illustrations of BWT based searching on small strings☆16Updated 6 years ago
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)☆24Updated 9 months ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Updated last year
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆43Updated 2 years ago
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆35Updated last month
- Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays☆17Updated 6 months ago
- A hash map using the BooPHF perfect hash function☆13Updated 9 years ago
- BWT-based index for graphs☆73Updated 9 months ago
- ☆24Updated 4 years ago
- Parallel Sequence to Graph Alignment☆36Updated 3 years ago
- ☆16Updated 2 years ago
- ☆16Updated 2 years ago
- Pacbio sequence alignment tool, please use "git clone" to copy and use the repository☆18Updated 6 years ago
- A read alignment visualization library for long reads☆10Updated 3 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Updated 3 weeks ago
- Self-contained, multi-threaded fasta/q parser☆48Updated last year
- Pan-genome Seed Index☆20Updated 9 months ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Updated 4 years ago
- Wavelet tree based on a fixed block boosting technique☆16Updated 4 years ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 5 years ago