felipelouza / gsufsortLinks
gsufsort: building suffix arrays, LCP-arrays and BWTs for string collections [AMB 2020]
☆27Updated 3 months ago
Alternatives and similar repositories for gsufsort
Users that are interested in gsufsort are comparing it to the libraries listed below
Sorting:
- Inducing enhanced suffix arrays for string collections [DCC'16, TCS 2017]☆27Updated 2 years ago
- Implementation of eBWT using Prefix-free parse (PFP)☆14Updated 9 months ago
- modified from gitlab.com/manzai/Big-BWT to support fasta files☆9Updated 4 months ago
- Wavelet tree based on a fixed block boosting technique☆16Updated 4 years ago
- R-Index-F Library for Pattern Matching☆13Updated 9 months ago
- A cheatsheet for most common Stringology tasks☆15Updated 4 years ago
- An optimal space run-length Burrows-Wheeler transform full-text index☆65Updated 2 years ago
- Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)☆47Updated last year
- Implementation of a Backpack Quotient Filter☆12Updated 10 months ago
- Efficient construction of the BWT using string compression☆18Updated this week
- SIMD-parallel BLAST X-drop DP on sequence graphs☆25Updated last year
- Online construction of run-length BWT (RLBWT) and r-index. Plus, online LZ77 parsing based on RLBWT.☆15Updated 7 years ago
- A tool for merging large BWTs☆26Updated 4 years ago
- Generalized enhanced suffix array construction in external memory [CPM'13, AMB 2017]☆15Updated 3 years ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆84Updated last year
- A lightweight suffix-sorting library enhanced with LCP construction☆11Updated 5 years ago
- vector illustrations of BWT based searching on small strings☆16Updated 6 years ago
- Relative data structures based on the BWT☆12Updated 7 years ago
- BWT Text Indexing Library: a set of tools to work with BWT-based text indexes☆25Updated 3 years ago
- Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays☆13Updated 2 weeks ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆43Updated last year
- ☆17Updated last year
- BWT-based index for graphs☆71Updated 2 months ago
- Fastq compression☆18Updated 5 years ago
- Parallel Lightweight Suffix Array Algorithm.☆18Updated 8 years ago
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆84Updated this week
- A space-efficient compressor based on the Re-Pair grammar☆11Updated 8 years ago
- deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph☆30Updated 4 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆12Updated 6 years ago
- Self-contained, multi-threaded fasta/q parser☆43Updated 8 months ago