felipelouza / gsufsort
gsufsort: building suffix arrays, LCP-arrays and BWTs for string collections [AMB 2020]
☆27Updated 2 months ago
Alternatives and similar repositories for gsufsort:
Users that are interested in gsufsort are comparing it to the libraries listed below
- modified from gitlab.com/manzai/Big-BWT to support fasta files☆9Updated 2 months ago
- Inducing enhanced suffix arrays for string collections [DCC'16, TCS 2017]☆26Updated 2 years ago
- R-Index-F Library for Pattern Matching☆13Updated 8 months ago
- Wavelet tree based on a fixed block boosting technique☆16Updated 3 years ago
- A cheatsheet for most common Stringology tasks☆15Updated 4 years ago
- A tool for merging large BWTs☆26Updated 4 years ago
- An optimal space run-length Burrows-Wheeler transform full-text index☆62Updated last year
- vector illustrations of BWT based searching on small strings☆16Updated 5 years ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Updated 10 months ago
- Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)☆47Updated last year
- Efficient construction of the BWT using string compression☆17Updated 6 months ago
- Fast and cache-efficient full-text pangenome index☆27Updated 3 weeks ago
- MONI: A Pangenomic Index for Finding MEMs☆37Updated 3 weeks ago
- A lightweight suffix-sorting library enhanced with LCP construction☆11Updated 5 years ago
- ☆17Updated last year
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆43Updated last year
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- Incremental construction of FM-index for DNA sequences☆70Updated 10 months ago
- Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays☆13Updated last week
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 4 years ago
- Fulgor is a fast and space-efficient colored de Bruijn graph index.☆49Updated last week
- A fast constructor of the compressed de Bruijn graph from many genomes☆40Updated 2 months ago
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- Self-contained, multi-threaded fasta/q parser☆43Updated 6 months ago
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)☆24Updated last month
- Space-efficient pseudoalignment with a colored de Bruijn graph☆53Updated last month
- BWT Text Indexing Library: a set of tools to work with BWT-based text indexes☆25Updated 2 years ago
- Implementation of a Backpack Quotient Filter☆11Updated 9 months ago
- FQSqueezer - FASTQ compressor based on k-mer statistics☆16Updated last year
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Updated 3 years ago