Alternatives and similar repositories for gsufsort

Users that are interested in gsufsort are comparing it to the libraries listed below

• felipelouza / gsa-is
  Inducing enhanced suffix arrays for string collections [DCC'16, TCS 2017]
  ☆26Updated 2 years ago
• nicolaprezza / r-index
  An optimal space run-length Burrows-Wheeler transform full-text index
  ☆65Updated 2 years ago
• alshai / Big-BWT
  modified from gitlab.com/manzai/Big-BWT to support fasta files
  ☆9Updated 4 months ago
• davidecenzato / PFP-eBWT
  Implementation of eBWT using Prefix-free parse (PFP)
  ☆14Updated 10 months ago
• drnatebrown / r-index-f
  R-Index-F Library for Pattern Matching
  ☆13Updated 10 months ago
• koeppl / stringsheet
  A cheatsheet for most common Stringology tasks
  ☆15Updated 4 years ago
• dominikkempa / faster-minuter
  Wavelet tree based on a fixed block boosting technique
  ☆16Updated 4 years ago
• jltsiren / bwt-merge
  A tool for merging large BWTs
  ☆26Updated 4 years ago
• bingmann / cobs
  COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
  ☆84Updated last year
• itomomoti / OnlineRlbwt
  Online construction of run-length BWT (RLBWT) and r-index. Plus, online LZ77 parsing based on RLBWT.
  ☆15Updated 7 years ago
• nicolaprezza / BWTIL
  BWT Text Indexing Library: a set of tools to work with BWT-based text indexes
  ☆25Updated 3 years ago
• jermp / sshash
  📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.
  ☆87Updated this week
• ddiazdom / grlBWT
  Efficient construction of the BWT using string compression
  ☆18Updated 2 weeks ago
• cartoonist / kseqpp
  Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)
  ☆50Updated last year
• ocxtal / dozeu
  SIMD-parallel BLAST X-drop DP on sequence graphs
  ☆25Updated last year
• jamshed / CaPS-SA
  Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays
  ☆13Updated this week
• felipelouza / egsa
  Generalized enhanced suffix array construction in external memory [CPM'13, AMB 2017]
  ☆15Updated 3 years ago
• ekg / drawbwt
  vector illustrations of BWT based searching on small strings
  ☆16Updated 6 years ago
• kurpicz / libdivsufsort
  A lightweight suffix-sorting library enhanced with LCP construction
  ☆11Updated 5 years ago
• vicLeva / bqf
  Implementation of a Backpack Quotient Filter
  ☆12Updated 2 weeks ago
• jermp / lphash
  Fast and compact locality-preserving minimal perfect hashing for k-mer sets.
  ☆43Updated last year
• Martinsos / opal
  SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)
  ☆38Updated last year
• cosmo-team / cosmo
  Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.
  ☆51Updated last year
• jlabeit / parallel-divsufsort
  Parallel Lightweight Suffix Array Algorithm.
  ☆18Updated 8 years ago
• mohsenzakeri / Movi
  Fast and cache-efficient full-text pangenome index
  ☆29Updated this week
• arun-sub / bwa-mem2
  Building upon BWA-MEM2, this repository includes performance improvements to the seeding and mate-rescue steps.
  ☆13Updated 3 years ago
• shubhamchandak94 / HARC
  Fastq compression
  ☆18Updated 5 years ago
• TravisWheelerLab / AvxWindowFmIndex
  A fast, AVX2 and ARM Neon accelerated FM index library
  ☆32Updated 6 months ago
• stringologytimes / StringologyTimes
  Paper Collection for Stringologists
  ☆17Updated 2 weeks ago
• medvedevgroup / TwoPaCo
  A fast constructor of the compressed de Bruijn graph from many genomes
  ☆41Updated 4 months ago