felipelouza / egsaLinks
Generalized enhanced suffix array construction in external memory [CPM'13, AMB 2017]
☆15Updated 3 years ago
Alternatives and similar repositories for egsa
Users that are interested in egsa are comparing it to the libraries listed below
Sorting:
- Wavelet tree based on a fixed block boosting technique☆16Updated 4 years ago
- Implementation of a Backpack Quotient Filter☆12Updated 3 weeks ago
- Online construction of run-length BWT (RLBWT) and r-index. Plus, online LZ77 parsing based on RLBWT.☆15Updated 7 years ago
- Inducing enhanced suffix arrays for string collections [DCC'16, TCS 2017]☆26Updated 2 years ago
- R-Index-F Library for Pattern Matching☆13Updated 10 months ago
- Optimal suffix sorting and LCP array construction for constant alphabets [IPL 2017]☆9Updated 6 years ago
- dynamic-updateable-index☆11Updated 9 years ago
- Implementation of eBWT using Prefix-free parse (PFP)☆14Updated 10 months ago
- modified from gitlab.com/manzai/Big-BWT to support fasta files☆9Updated 4 months ago
- A tool for merging large BWTs☆26Updated 4 years ago
- vector illustrations of BWT based searching on small strings☆16Updated 6 years ago
- gsufsort: building suffix arrays, LCP-arrays and BWTs for string collections [AMB 2020]☆27Updated 4 months ago
- Fast and cache-efficient full-text pangenome index☆29Updated last week
- Collection of Suffix Array Construction Algorithms (SACAs)☆33Updated 6 years ago
- Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays☆13Updated last week
- Efficient construction of the BWT using string compression☆18Updated 3 weeks ago
- Relative data structures based on the BWT☆12Updated 7 years ago
- External memory suffix array construction using inducing☆11Updated 4 years ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆25Updated last year
- An alignment-free, reference-free and incremental data structure for colored de Bruijn graph with application to pan-genome indexing.☆44Updated 3 years ago
- A cheatsheet for most common Stringology tasks☆15Updated 4 years ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆84Updated last year
- Prefix Free Parsing☆8Updated last year
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆51Updated last year
- An optimal space run-length Burrows-Wheeler transform full-text index☆65Updated 2 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆41Updated 4 months ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆43Updated last year
- Paper Collection for Stringologists☆17Updated this week
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆50Updated 2 weeks ago
- AStarix: Fast and Optimal Sequence-to-Graph Aligner☆74Updated 3 years ago