felipelouza / egsaLinks
Generalized enhanced suffix array construction in external memory [CPM'13, AMB 2017]
☆15Updated 3 years ago
Alternatives and similar repositories for egsa
Users that are interested in egsa are comparing it to the libraries listed below
Sorting:
- Wavelet tree based on a fixed block boosting technique☆16Updated 4 years ago
- Online construction of run-length BWT (RLBWT) and r-index. Plus, online LZ77 parsing based on RLBWT.☆15Updated 7 years ago
- Optimal suffix sorting and LCP array construction for constant alphabets [IPL 2017]☆9Updated 6 years ago
- Implementation of a Backpack Quotient Filter☆12Updated 10 months ago
- R-Index-F Library for Pattern Matching☆13Updated 9 months ago
- Inducing enhanced suffix arrays for string collections [DCC'16, TCS 2017]☆27Updated 2 years ago
- Implementation of eBWT using Prefix-free parse (PFP)☆14Updated 9 months ago
- External memory suffix array construction using inducing☆11Updated 4 years ago
- A tool for merging large BWTs☆26Updated 4 years ago
- modified from gitlab.com/manzai/Big-BWT to support fasta files☆9Updated 4 months ago
- dynamic-updateable-index☆11Updated 9 years ago
- An optimal space run-length Burrows-Wheeler transform full-text index☆65Updated 2 years ago
- vector illustrations of BWT based searching on small strings☆16Updated 6 years ago
- gsufsort: building suffix arrays, LCP-arrays and BWTs for string collections [AMB 2020]☆27Updated 3 months ago
- Efficient construction of the BWT using string compression☆18Updated last week
- Collection of Suffix Array Construction Algorithms (SACAs)☆33Updated 6 years ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆84Updated last year
- Fast and cache-efficient full-text pangenome index☆29Updated 2 weeks ago
- BWT Text Indexing Library: a set of tools to work with BWT-based text indexes☆25Updated 3 years ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆25Updated last year
- Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays☆13Updated this week
- BWT-based index for graphs☆71Updated 2 months ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆40Updated 4 months ago
- SetSketch: Filling the Gap between MinHash and HyperLogLog☆49Updated 3 years ago
- A cheatsheet for most common Stringology tasks☆15Updated 4 years ago
- Fastq compression☆18Updated 5 years ago
- DartMinHash: Fast Sketching for Weighted Sets☆13Updated 4 years ago
- A space-efficient compressor based on the Re-Pair grammar☆11Updated 8 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- A hash map using the BooPHF perfect hash function☆12Updated 8 years ago