Generalized enhanced suffix array construction in external memory [CPM'13, AMB 2017]
☆17Aug 9, 2021Updated 4 years ago
Alternatives and similar repositories for egsa
Users that are interested in egsa are comparing it to the libraries listed below
Sorting:
- Optimal suffix sorting and LCP array construction for constant alphabets [IPL 2017]☆10Aug 17, 2018Updated 7 years ago
- Inducing enhanced suffix arrays for string collections [DCC'16, TCS 2017]☆26Dec 2, 2025Updated 3 months ago
- Induced Suffix Array and LCP construction based on the SAIS algorithm.☆11Dec 12, 2019Updated 6 years ago
- gsufsort: building suffix arrays, LCP-arrays and BWTs for string collections [AMB 2020]☆26Feb 16, 2025Updated last year
- Collection of Suffix Array Construction Algorithms (SACAs)☆34Mar 29, 2019Updated 6 years ago
- Implementation of eBWT using Prefix-free parse (PFP)☆14Jul 14, 2025Updated 7 months ago
- Parallel Suffix Array, LCP Array, and Suffix Tree Construction☆51Aug 12, 2019Updated 6 years ago
- linear time suffix array construction algorithm☆12Oct 28, 2016Updated 9 years ago
- Induced Suffix Array with LCP construction (Mirror)☆23Apr 24, 2012Updated 13 years ago
- Relative data structures based on the BWT☆12Apr 28, 2018Updated 7 years ago
- A simple C++11 memory monitor☆15Dec 17, 2015Updated 10 years ago
- A lightweight suffix-sorting library enhanced with LCP construction☆13Mar 26, 2020Updated 5 years ago
- Wavelet tree based on a fixed block boosting technique☆16May 18, 2021Updated 4 years ago
- Parallel Lightweight Suffix Array Algorithm.☆19Dec 28, 2016Updated 9 years ago
- vector illustrations of BWT based searching on small strings☆16Apr 29, 2019Updated 6 years ago
- Implementation of the sacabench framework☆19May 15, 2021Updated 4 years ago
- BWT Text Indexing Library: a set of tools to work with BWT-based text indexes☆25Apr 25, 2022Updated 3 years ago
- Lightweight resources assembly algorithm☆19May 17, 2017Updated 8 years ago
- Incremental construction of FM-index for DNA sequences☆72Jun 12, 2024Updated last year
- Offline Dictionary-based Compression (Re-Pair, Recursive Pairing)☆27May 29, 2023Updated 2 years ago
- A tool for merging large BWTs☆24Nov 26, 2020Updated 5 years ago
- ☆27Jul 7, 2015Updated 10 years ago
- Example project presented at the Succinct Data Structure Tutorial at SIGIR 2016☆27Oct 27, 2018Updated 7 years ago
- BEETL☆97Apr 15, 2023Updated 2 years ago
- An optimal space run-length Burrows-Wheeler transform full-text index☆68May 31, 2023Updated 2 years ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Apr 14, 2025Updated 10 months ago
- 📝 Easily convert Digital Object Identifier (DOI) and Uniform Resource Locator (URL) to BibTeX and DOI to plain text.☆38Apr 28, 2023Updated 2 years ago
- msufsort parallel suffix array construction algorithm☆30Nov 16, 2020Updated 5 years ago
- The libsais library provides fast linear-time construction of suffix array (SA), generalized suffix array (GSA), longest common prefix (L…☆235Sep 10, 2025Updated 5 months ago
- An efficient tool for cross-population fixation index estimation on variant call format files☆11Updated this week
- Detecting Archaic Introgression from Population Genetic Data with S*☆10Jan 28, 2026Updated last month
- simd enabled column imprints☆11Feb 12, 2018Updated 8 years ago
- Postprocessing gadgets for output generated by RevBayes☆14Feb 22, 2026Updated last week
- ☆12Feb 16, 2025Updated last year
- 集鱼类拍照、PIT ID识别、体 长、体宽、眼宽、鳍长等15个体型特征以及体重信息收集和记录于一体的软件——测鱼宝☆21Mar 5, 2025Updated last year
- ☆12Aug 23, 2023Updated 2 years ago
- an R based software package that makes polygenic traits prediction using gradient boosted and LD adjusted gene score weights.☆10Apr 9, 2019Updated 6 years ago
- misFinder: Identify mis-assemblies in an unbiased manner using reference and paired-end reads☆10Oct 17, 2015Updated 10 years ago
- Package for species delimitation analysis☆11Jan 7, 2025Updated last year