nicolaprezza / BWTIL
BWT Text Indexing Library: a set of tools to work with BWT-based text indexes
☆25Updated 2 years ago
Alternatives and similar repositories for BWTIL:
Users that are interested in BWTIL are comparing it to the libraries listed below
- Relative data structures based on the BWT☆12Updated 6 years ago
- Compact Tree Representation☆16Updated 7 years ago
- Online construction of run-length BWT (RLBWT) and r-index. Plus, online LZ77 parsing based on RLBWT.☆15Updated 6 years ago
- Run-length compressed BWT with LZ77 sampled suffix array☆10Updated 2 years ago
- Wavelet tree based on a fixed block boosting technique☆16Updated 3 years ago
- A tool for merging large BWTs☆26Updated 4 years ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆83Updated 11 months ago
- Dynamic succinct/compressed data structures☆112Updated 7 months ago
- An efficient external-memory algorithm for the construction of minimal perfect hash functions☆62Updated 7 months ago
- Compact Data Structures Library☆124Updated 10 years ago
- compressed, queryable variation graphs☆11Updated 9 years ago
- FM-Index full-text index implementation using RRR Wavelet trees (libcds) and fast suffix sorting (libdivsufsort) including experimental r…☆104Updated 9 years ago
- Bit packed vector of integral values☆26Updated last year
- FM-index representation of a de Bruijn graph☆27Updated 7 years ago
- An optimal space run-length Burrows-Wheeler transform full-text index☆61Updated last year
- Compact Data Structures Library☆98Updated 2 years ago
- R-Index-F Library for Pattern Matching☆13Updated 5 months ago
- A cheatsheet for most common Stringology tasks☆15Updated 3 years ago
- TU DOrtmund lossless COMPression framework☆17Updated 4 months ago
- Space-Efficient, High-Performance Rank & Select Structures on Uncompressed Bit Sequences☆54Updated last year
- Succinct Data Structure Library☆105Updated 11 years ago
- An alignment-free, reference-free and incremental data structure for colored de Bruijn graph with application to pan-genome indexing.☆43Updated 2 years ago
- Suite of universal indexes for Highly Repetitive Document Collections☆20Updated 4 years ago
- memory mapped multimap, multiset, and implicit interval tree based on an in-place parallel sort☆27Updated 3 years ago
- Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index☆81Updated 10 months ago
- LZ Double factor Factorization.☆11Updated 7 years ago
- Static Huffman coding☆10Updated 7 years ago
- A C++ container-like data structure for storing a vector of bits with fast appending on both sides and fast insertion in the middle, all …☆22Updated 2 years ago
- A compressed, associative, exact, and weighted dictionary for k-mers.☆86Updated 3 months ago
- dynamic-updateable-index☆11Updated 9 years ago