nicolaprezza / BWTILLinks
BWT Text Indexing Library: a set of tools to work with BWT-based text indexes
☆25Updated 3 years ago
Alternatives and similar repositories for BWTIL
Users that are interested in BWTIL are comparing it to the libraries listed below
Sorting:
- Dynamic succinct/compressed data structures☆112Updated last year
- Online construction of run-length BWT (RLBWT) and r-index. Plus, online LZ77 parsing based on RLBWT.☆14Updated 7 years ago
- An efficient external-memory algorithm for the construction of minimal perfect hash functions☆65Updated last year
- An optimal space run-length Burrows-Wheeler transform full-text index☆65Updated 2 years ago
- Wavelet tree based on a fixed block boosting technique☆16Updated 4 years ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆86Updated last year
- Compact Tree Representation☆16Updated 8 years ago
- Relative data structures based on the BWT☆12Updated 7 years ago
- FM-Index full-text index implementation using RRR Wavelet trees (libcds) and fast suffix sorting (libdivsufsort) including experimental r…☆107Updated 10 years ago
- An alignment-free, reference-free and incremental data structure for colored de Bruijn graph with application to pan-genome indexing.☆44Updated 3 years ago
- Succinct Data Structure Library☆107Updated 12 years ago
- A tool for merging large BWTs☆25Updated 4 years ago
- compressed, queryable variation graphs☆11Updated 10 years ago
- Compact Data Structures Library☆101Updated 3 years ago
- Compact Data Structures Library☆128Updated 11 years ago
- Succinct Data Structure Library 3.0☆96Updated 2 months ago
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆89Updated last week
- Implementation of eBWT using Prefix-free parse (PFP)☆14Updated 4 months ago
- A cheatsheet for most common Stringology tasks☆14Updated 4 years ago
- Bit packed vector of integral values☆27Updated 9 months ago
- Parallel Lightweight Suffix Array Algorithm.☆18Updated 8 years ago
- Implementation of a Backpack Quotient Filter☆13Updated 4 months ago
- Bloom-filter based minimal perfect hash function library☆268Updated 3 months ago
- SetSketch: Filling the Gap between MinHash and HyperLogLog☆48Updated 4 years ago
- C++ Implementations of sketch data structures with SIMD Parallelism, including Python bindings☆155Updated last year
- Static Huffman coding☆10Updated 8 years ago
- Extremely fast inplace radix sort☆42Updated 5 years ago
- R-Index-F Library for Pattern Matching☆12Updated last year
- Inducing enhanced suffix arrays for string collections [DCC'16, TCS 2017]☆26Updated last month
- Space-Efficient, High-Performance Rank & Select Structures on Uncompressed Bit Sequences☆55Updated last year