felipelouza / gsa-isLinks
Inducing enhanced suffix arrays for string collections [DCC'16, TCS 2017]
☆26Updated 2 years ago
Alternatives and similar repositories for gsa-is
Users that are interested in gsa-is are comparing it to the libraries listed below
Sorting:
- gsufsort: building suffix arrays, LCP-arrays and BWTs for string collections [AMB 2020]☆27Updated 5 months ago
- R-Index-F Library for Pattern Matching☆13Updated 11 months ago
- Efficient construction of the BWT using string compression☆18Updated 2 months ago
- Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)☆51Updated last year
- vector illustrations of BWT based searching on small strings☆16Updated 6 years ago
- Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays☆13Updated last month
- A cheatsheet for most common Stringology tasks☆15Updated 4 years ago
- ☆17Updated 2 years ago
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)☆24Updated 4 months ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50Updated last year
- Fast and cache-efficient full-text pangenome index☆29Updated 2 weeks ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆25Updated last year
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆25Updated 3 months ago
- Implementation of eBWT using Prefix-free parse (PFP)☆14Updated 2 weeks ago
- A tool for merging large BWTs☆26Updated 4 years ago
- A hash map using the BooPHF perfect hash function☆13Updated 8 years ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆43Updated last year
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆52Updated last week
- Incremental construction of FM-index for DNA sequences☆71Updated last year
- Self-contained, multi-threaded fasta/q parser☆45Updated 10 months ago
- A repository for generating strobemers and evalaution☆79Updated last year
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- Efficient, parallel compression for terabyte-scale data☆48Updated 2 months ago
- Compacted and colored de Bruijn graph construction and querying☆84Updated this week
- Adaptive semi-global banded alignment on string graphs☆67Updated 7 years ago
- BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper☆51Updated 3 years ago
- MONI: A Pangenomic Index for Finding MEMs☆37Updated 4 months ago
- BWT-based index for graphs☆71Updated 4 months ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.