Inducing enhanced suffix arrays for string collections [DCC'16, TCS 2017]
☆27Dec 2, 2025Updated 3 months ago
Alternatives and similar repositories for gsa-is
Users that are interested in gsa-is are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- gsufsort: building suffix arrays, LCP-arrays and BWTs for string collections [AMB 2020]☆26Feb 16, 2025Updated last year
- Generalized enhanced suffix array construction in external memory [CPM'13, AMB 2017]☆17Aug 9, 2021Updated 4 years ago
- Optimal suffix sorting and LCP array construction for constant alphabets [IPL 2017]☆10Aug 17, 2018Updated 7 years ago
- Collection of Suffix Array Construction Algorithms (SACAs)☆34Mar 29, 2019Updated 7 years ago
- Finding Maximal Exact Matches (MEMs) using a Sampled LCP Array☆10Mar 7, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- vector illustrations of BWT based searching on small strings☆16Apr 29, 2019Updated 6 years ago
- Implementation of eBWT using Prefix-free parse (PFP)☆14Jul 14, 2025Updated 8 months ago
- A cheatsheet for most common Stringology tasks☆14Apr 14, 2021Updated 4 years ago
- Paper Collection for Stringologists☆17Mar 6, 2026Updated 3 weeks ago
- A lightweight suffix-sorting library enhanced with LCP construction☆13Mar 26, 2020Updated 6 years ago
- Relative data structures based on the BWT☆12Apr 28, 2018Updated 7 years ago
- The libsais library provides fast linear-time construction of suffix array (SA), generalized suffix array (GSA), longest common prefix (L…☆238Sep 10, 2025Updated 6 months ago
- Implementation of the sacabench framework☆19May 15, 2021Updated 4 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Parallel Suffix Array, LCP Array, and Suffix Tree Construction☆51Aug 12, 2019Updated 6 years ago
- MONI: A Pangenomic Index for Finding MEMs☆37Mar 25, 2025Updated last year
- A simple C++11 memory monitor☆15Dec 17, 2015Updated 10 years ago
- R-Index-F Library for Pattern Matching☆12Aug 8, 2024Updated last year
- String Visualizer☆12Dec 18, 2025Updated 3 months ago
- mGEMS Genomic epidemiology with mixed samples☆15Sep 4, 2024Updated last year
- BWT Text Indexing Library: a set of tools to work with BWT-based text indexes☆25Apr 25, 2022Updated 3 years ago
- A fast, AVX2 and ARM Neon accelerated FM index library☆36Dec 9, 2024Updated last year
- Online construction of run-length BWT (RLBWT) and r-index. Plus, online LZ77 parsing based on RLBWT.☆14May 11, 2018Updated 7 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- C++20 Generalized Suffix Tree implementation☆13Oct 23, 2022Updated 3 years ago
- Wavelet tree based on a fixed block boosting technique☆16May 18, 2021Updated 4 years ago
- A C++ container-like data structure for storing a vector of bits with fast appending on both sides and fast insertion in the middle, all …☆26Apr 26, 2022Updated 3 years ago
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 7 months ago
- Fast Neighbor-Joining and other distance-based methods for phylogenetics☆15Jun 21, 2024Updated last year
- An optimal space run-length Burrows-Wheeler transform full-text index☆68May 31, 2023Updated 2 years ago
- Small library of string algorithms☆19Feb 9, 2023Updated 3 years ago
- A tool for merging large BWTs☆24Nov 26, 2020Updated 5 years ago
- Tools for analyzing and comparing SARS-CoV-2 phylogenies☆10Nov 21, 2020Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Lift-over alignments from variant-aware references☆34Mar 4, 2023Updated 3 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Mar 13, 2025Updated last year
- FM-Index full-text index implementation using RRR Wavelet trees (libcds) and fast suffix sorting (libdivsufsort) including experimental r…☆110Jan 22, 2015Updated 11 years ago
- Run-length compressed BWT with LZ77 sampled suffix array☆10Apr 25, 2022Updated 3 years ago
- TU DOrtmund lossless COMPression framework☆19Sep 7, 2024Updated last year
- Parallel Lightweight Suffix Array Algorithm.☆19Dec 28, 2016Updated 9 years ago
- Method to measure the amount of allocated memory of a program at run-time.☆70Apr 4, 2022Updated 3 years ago