A python toolkit for building and querying multi-string BWTs
☆27Mar 2, 2017Updated 9 years ago
Alternatives and similar repositories for msbwt
Users that are interested in msbwt are comparing it to the libraries listed below
Sorting:
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Sep 1, 2020Updated 5 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Jul 7, 2020Updated 5 years ago
- Efficient construction of the BWT using string compression☆21Jun 3, 2025Updated 9 months ago
- A demo implementation of Succinct de Bruijn Graphs.☆25Jun 30, 2013Updated 12 years ago
- Location of public benchmarking; primarily final results☆18Feb 17, 2025Updated last year
- Incremental construction of FM-index for DNA sequences☆72Jun 12, 2024Updated last year
- FM-index is the fastest full text search algorithm using a compressed index file. This is FM-index for JSX/JS/AMD/Common.js.☆11Nov 9, 2013Updated 12 years ago
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 9 years ago
- Cool Bioinformatics Scripts☆12May 21, 2024Updated last year
- Lightweight resources assembly algorithm☆19May 17, 2017Updated 8 years ago
- Small general purpose library for C and Python with focus on bioinformatics.☆31Sep 15, 2022Updated 3 years ago
- A tool for merging large BWTs☆24Nov 26, 2020Updated 5 years ago
- gsufsort: building suffix arrays, LCP-arrays and BWTs for string collections [AMB 2020]☆26Feb 16, 2025Updated last year
- UniqTag: Content-derived unique and stable identifiers for gene annotation☆10May 4, 2015Updated 10 years ago
- Long read to reference genome mapping tool☆13Mar 14, 2024Updated last year
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- Command line tools for IntSpan related bioinformatics operations☆12Apr 9, 2025Updated 10 months ago
- libstrbuf: A powerful string library for C☆17Oct 15, 2016Updated 9 years ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Sep 26, 2016Updated 9 years ago
- ☆38Jan 14, 2026Updated last month
- Genotype likelihood simulator for VCF/BCF files☆16May 7, 2025Updated 9 months ago
- Code accompanying the publication for compressed graph annotation☆13Feb 14, 2019Updated 7 years ago
- A succinct colored dBG representation☆12Sep 11, 2018Updated 7 years ago
- Basic Local Alignment and Search Tool for Oxford Nanopore Long Sequences☆10Aug 1, 2016Updated 9 years ago
- ☆13Jan 8, 2020Updated 6 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆59Sep 11, 2025Updated 5 months ago
- Substring index for paths in a graph☆60Feb 10, 2026Updated 3 weeks ago
- Scaffolding with Ultralong Reads☆15Nov 11, 2020Updated 5 years ago
- A cheatsheet for most common Stringology tasks☆14Apr 14, 2021Updated 4 years ago
- Documentation and tutorials on using AWS for biomedical research☆18May 3, 2025Updated 10 months ago
- d'accord is a non hybrid long read consensus program based on local de Bruijn graph assembly☆19Sep 12, 2018Updated 7 years ago
- KAUST Assembly Read Error Correction Tool☆15Aug 15, 2015Updated 10 years ago
- alignment and assembly free☆14May 29, 2023Updated 2 years ago
- Genotyping of copy number sensitive allele-specific haplotypes☆27Nov 6, 2025Updated 3 months ago
- A python package from Pacific Biosciences to analyze centromeric sequences☆21Oct 7, 2015Updated 10 years ago
- BWT-based index for graphs☆73Mar 12, 2025Updated 11 months ago
- ☆24Jan 25, 2024Updated 2 years ago
- Practical Dynamic de Bruijn Graphs☆18Oct 1, 2020Updated 5 years ago
- Pacbio sequence alignment tool, please use "git clone" to copy and use the repository☆18Feb 17, 2019Updated 7 years ago