holtjma / msbwtLinks
A python toolkit for building and querying multi-string BWTs
☆27Updated 8 years ago
Alternatives and similar repositories for msbwt
Users that are interested in msbwt are comparing it to the libraries listed below
Sorting:
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 5 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Updated 2 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- De Bruijn graph representation in low memory☆35Updated last year
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆53Updated last year
- Substring index for paths in a graph☆60Updated last week
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- Efficient, parallel compression for terabyte-scale data☆58Updated 4 months ago
- Adaptive semi-global banded alignment on string graphs☆66Updated 7 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆20Updated 5 years ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Updated last year
- Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"☆64Updated 5 years ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆56Updated last year
- efficient alignment of strings to partially ordered string graphs☆33Updated 4 years ago
- Benchmark on adaptive banded algorithm☆19Updated 2 years ago
- A succinct colored dBG representation☆12Updated 7 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50Updated last year
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 9 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- ☆28Updated 10 months ago
- A fast, AVX2 and ARM Neon accelerated FM index library☆36Updated last year
- a string to graph aligner☆41Updated 9 years ago
- Bidirectional WFA (Paper)☆48Updated last year
- Rust bindings to the wavefront algorithm C implementation☆17Updated 3 years ago
- Optimized sequence graph implementations for graph genomics☆34Updated this week
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Updated 10 months ago
- ☆24Updated 4 years ago
- GFA parser in Rust☆30Updated 2 years ago
- Parallel Sequence to Graph Alignment☆36Updated 3 years ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆59Updated this week