kurpicz / libdivsufsortLinks
A lightweight suffix-sorting library enhanced with LCP construction
☆12Updated 5 years ago
Alternatives and similar repositories for libdivsufsort
Users that are interested in libdivsufsort are comparing it to the libraries listed below
Sorting:
- Inducing enhanced suffix arrays for string collections [DCC'16, TCS 2017]☆26Updated last month
- A cheatsheet for most common Stringology tasks☆14Updated 4 years ago
- Wavelet tree based on a fixed block boosting technique☆16Updated 4 years ago
- Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays☆16Updated 4 months ago
- R-Index-F Library for Pattern Matching☆12Updated last year
- A space-efficient compressor based on the Re-Pair grammar☆10Updated 8 years ago
- Online construction of run-length BWT (RLBWT) and r-index. Plus, online LZ77 parsing based on RLBWT.☆14Updated 7 years ago
- The libsais library provides fast linear-time construction of suffix array (SA), generalized suffix array (GSA), longest common prefix (L…☆226Updated 2 months ago
- Implementation of eBWT using Prefix-free parse (PFP)☆14Updated 4 months ago
- An optimal space run-length Burrows-Wheeler transform full-text index☆65Updated 2 years ago
- gsufsort: building suffix arrays, LCP-arrays and BWTs for string collections [AMB 2020]☆28Updated 9 months ago
- Efficient construction of the BWT using string compression☆20Updated 5 months ago
- Implementation of a Backpack Quotient Filter☆13Updated 4 months ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆43Updated last year
- A tool for merging large BWTs☆25Updated 4 years ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆86Updated last year
- vector illustrations of BWT based searching on small strings☆16Updated 6 years ago
- Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)☆54Updated last year
- Simple succinct data structures (in Rust)☆51Updated 11 months ago
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆89Updated last week
- A hash map using the BooPHF perfect hash function☆13Updated 9 years ago
- BWT Text Indexing Library: a set of tools to work with BWT-based text indexes☆25Updated 3 years ago
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆34Updated last week
- ☆24Updated 4 years ago
- Dynamic succinct/compressed data structures☆112Updated last year
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Updated last year
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)☆24Updated 8 months ago
- In-place Parallel Super Scalar Radix Sort (IPS²Ra)☆34Updated 10 months ago
- ☆16Updated 2 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Updated 8 months ago