Alternatives and similar repositories for libdivsufsort:

Users that are interested in libdivsufsort are comparing it to the libraries listed below

• felipelouza / gsa-is
  Inducing enhanced suffix arrays for string collections [DCC'16, TCS 2017]
  ☆26Updated 2 years ago
• dominikkempa / faster-minuter
  Wavelet tree based on a fixed block boosting technique
  ☆16Updated 3 years ago
• koeppl / stringsheet
  A cheatsheet for most common Stringology tasks
  ☆15Updated 4 years ago
• jamshed / CaPS-SA
  Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays
  ☆13Updated 3 weeks ago
• marco-oliva / pfp
  Prefix Free Parsing
  ☆8Updated last year
• felipelouza / gsufsort
  gsufsort: building suffix arrays, LCP-arrays and BWTs for string collections [AMB 2020]
  ☆27Updated 2 months ago
• alshai / Big-BWT
  modified from gitlab.com/manzai/Big-BWT to support fasta files
  ☆9Updated 3 months ago
• drnatebrown / r-index-f
  R-Index-F Library for Pattern Matching
  ☆13Updated 9 months ago
• itomomoti / OnlineRlbwt
  Online construction of run-length BWT (RLBWT) and r-index. Plus, online LZ77 parsing based on RLBWT.
  ☆15Updated 7 years ago
• mohsenzakeri / Movi
  Fast and cache-efficient full-text pangenome index
  ☆27Updated last month
• nicolaprezza / Re-Pair
  A space-efficient compressor based on the Re-Pair grammar
  ☆11Updated 8 years ago
• vicLeva / bqf
  Implementation of a Backpack Quotient Filter
  ☆11Updated 9 months ago
• jltsiren / bwt-merge
  A tool for merging large BWTs
  ☆26Updated 4 years ago
• ekg / drawbwt
  vector illustrations of BWT based searching on small strings
  ☆16Updated 6 years ago
• ddiazdom / grlBWT
  Efficient construction of the BWT using string compression
  ☆17Updated 6 months ago
• jermp / lphash
  Fast and compact locality-preserving minimal perfect hashing for k-mer sets.
  ☆43Updated last year
• stringologytimes / StringologyTimes
  Paper Collection for Stringologists
  ☆17Updated last week
• algbio / themisto
  Space-efficient pseudoalignment with a colored de Bruijn graph
  ☆52Updated last month
• algbio / SBWT
  Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)
  ☆24Updated last month
• nicolaprezza / r-index
  An optimal space run-length Burrows-Wheeler transform full-text index
  ☆64Updated last year
• cartoonist / kseqpp
  Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)
  ☆47Updated last year
• Martinsos / opal
  SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)
  ☆38Updated last year
• medvedevgroup / UST
  ☆25Updated 4 years ago
• jermp / sshash
  📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.
  ☆84Updated last week
• bingmann / cobs
  COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
  ☆84Updated last year
• jltsiren / simple-sds
  Simple succinct data structures (in Rust)
  ☆50Updated 5 months ago
• jeizenga / wfalm
  Refinements of the WFA alignment algorithm with better complexity
  ☆26Updated 3 years ago
• ips4o / ips2ra
  In-place Parallel Super Scalar Radix Sort (IPS²Ra)
  ☆31Updated 3 months ago
• dfguan / rHAT
  Pacbio sequence alignment tool, please use "git clone" to copy and use the repository
  ☆18Updated 6 years ago
• ocxtal / dozeu
  SIMD-parallel BLAST X-drop DP on sequence graphs
  ☆24Updated 11 months ago