iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.
☆135Jun 2, 2026Updated last week
Alternatives and similar repositories for ivar
Users that are interested in ivar are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Depth-weighted De-Mixing☆133Updated this week
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆91Nov 8, 2023Updated 2 years ago
- The ARTIC fieldbioinformatics pipeline☆133Apr 28, 2026Updated last month
- a tool for designing primer panels for multiplex PCR.☆108Feb 5, 2024Updated 2 years ago
- SC2 variant detection and composition pipeline☆19Jul 14, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation☆115Updated this week
- Small collection of tools for performing quality control on coronavirus sequencing data and genomes☆49May 14, 2026Updated 3 weeks ago
- Ultrafast Sample Placement on Existing Trees☆140Jun 1, 2026Updated last week
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆42Feb 26, 2026Updated 3 months ago
- The Zika bioinformatics pipeline☆37Mar 29, 2020Updated 6 years ago
- SARS-CoV-2 genomics☆16Jun 20, 2025Updated 11 months ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- ARTIC nanopore protocol for nCoV2019 novel coronavirus☆171Mar 22, 2023Updated 3 years ago
- QuasiModo: Assessing viral genomic analysis methods on HCMV strain mixture☆12Sep 22, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A COVID-19 CoV Genetics (CG) browser to inform therapeutics development☆26Jan 12, 2026Updated 4 months ago
- Assembly and intrahost/low-frequency variant calling for viral samples☆164May 13, 2026Updated 3 weeks ago
- A tool for exploring large trees in the browser☆133May 7, 2026Updated last month
- A SARS-CoV-2 Mutation Pattern Query Tool☆17Mar 21, 2023Updated 3 years ago
- Quasitools is a collection of tools for analysing viral quasispecies data.☆27Nov 25, 2021Updated 4 years ago
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆259May 26, 2026Updated 2 weeks ago
- Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.☆32Apr 10, 2026Updated 2 months ago
- snipit: summarise snps relative to your reference sequence☆173Jan 13, 2026Updated 4 months ago
- V-pipe is a pipeline designed for analysing NGS data of short viral genomes☆147May 15, 2026Updated 3 weeks ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- VIGOR4☆22Aug 15, 2025Updated 9 months ago
- Rapid analysis and visualization of coronavirus genome variation☆48Apr 2, 2026Updated 2 months ago
- Software package for assigning SARS-CoV-2 genome sequences to global lineages.☆454Apr 7, 2026Updated 2 months ago
- ☆19Nov 24, 2025Updated 6 months ago
- Used to trim off the primer sequence from mutiplex amplicon sequencing☆24Dec 20, 2025Updated 5 months ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆40Apr 6, 2026Updated 2 months ago
- Repo for PrimerSchemes☆17Jun 3, 2026Updated last week
- ☆24Feb 2, 2026Updated 4 months ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ARTIC SARS-CoV-2 workflow and reporting☆51Apr 25, 2025Updated last year
- ☆84Sep 13, 2023Updated 2 years ago
- taxonomic classifier based on the kraken2 algorithms and more☆46Dec 12, 2025Updated 5 months ago
- A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.☆347Apr 12, 2023Updated 3 years ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆252Updated this week
- Store of the trained model for pangolin to access.☆55Oct 4, 2022Updated 3 years ago
- Primer schemes for real-time genome epidemiology☆30Jun 14, 2023Updated 2 years ago