abyzovlab / vcf2diploid

Related projects ⓘ

Alternatives and complementary repositories for vcf2diploid

• churchill-lab / g2gtools
  Personal diploid genome creation and coordinate conversion
  ☆21Updated last month
• edsgard / geneiase
  Gene-based test of allele-specific expression without requiring haplotype information
  ☆14Updated 6 years ago
• vibansal / hapcut
  program for haplotype phasing from sequence reads and related tools
  ☆25Updated 5 years ago
• aquaskyline / 16GT
  Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
  ☆27Updated 10 months ago
• churchill-lab / emase
  Expectation-Maximization algorithm for Allele-Specific Expression
  ☆21Updated last year
• DyogenIBENS / FINSURF
  FINSURF is a tool designed to analyse lists of sequences variants in the human genome.
  ☆11Updated 2 years ago
• ay-lab / HiCnv
  HiCnv is used to call copy number variations and breakpoints from Hi-C data
  ☆21Updated 7 months ago
• uio-bmi / graph_peak_caller
  ChIP-seq peak caller for reads mapped to a graph-based reference genome
  ☆19Updated 3 months ago
• maxplanck-ie / HiCAssembler
  Software to assemble contigs/scaffolds into chromosomes using Hi-C data
  ☆27Updated last month
• lganel / SVScore
  Prioritize structural variants based on CADD scores
  ☆28Updated 4 years ago
• vpc-ccg / calib
  Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.
  ☆38Updated last year
• sinamajidian / phaseme
  A tool set to assess the quality of the per read phasing and reduce the errors.
  ☆12Updated 4 years ago
• keleslab / mHiC
  ☆12Updated 4 years ago
• HipSTR-Tool / HipSTR
  Genotype and phase short tandem repeats using Illumina whole-genome sequencing data
  ☆27Updated 3 years ago
• ruolin / strawberry
  A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)
  ☆23Updated 3 years ago
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆31Updated last month
• cauyrd / transIndel
  Indel caller for DNA-seq or RNA-seq
  ☆14Updated last year
• applevir / STEAK
  Specific Transposable Element Aligner (HERV-K)
  ☆16Updated 5 years ago
• lamortenera / epicseg
  Chromatin segmentation in R
  ☆19Updated 6 years ago
• favorov / stereogene
  ☆12Updated this week
• HurlesGroupSanger / DeNovoWEST
  ☆21Updated 3 months ago
• bcbio / bcbio_validations
  Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses
  ☆31Updated 2 years ago
• cortes-ciriano-lab / ReConPlot
  ☆21Updated 2 weeks ago
• oscarlr / MsPAC
  Phase reads, assemble haplotypes and detect SVs
  ☆19Updated 4 years ago
• ywchoi / phasing
  Evaluation of phasing performance
  ☆21Updated 6 years ago
• mpertea / stringtie2-initial-release
  Transcript assembly and quantification for RNA-Seq
  ☆8Updated 4 years ago
• Xinglab / TideHunter
  TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
  ☆19Updated 5 months ago
• jmonlong / sveval
  Functions to compare a SV call sets against a truth set.
  ☆26Updated 6 months ago
• clemgoub / TypeTE
  Genotyping of segregating mobile elements insertions
  ☆19Updated 3 years ago
• JialiUMassWengLab / TEMP
  TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…
  ☆21Updated 7 years ago