☆69Dec 9, 2020Updated 5 years ago
Alternatives and similar repositories for sabre
Users that are interested in sabre are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DEPRECATED Lightweight bioinformatics pipeline tools using iPython☆14Dec 11, 2015Updated 10 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Oct 5, 2015Updated 11 years ago
- Basic, no assumptions, multi-pileup☆24Mar 26, 2014Updated 12 years ago
- Maximum likelihood demultiplexing☆54Aug 6, 2026Updated 2 months ago
- Rapid competitive read demulitplexer. Made with tries.☆23Oct 14, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 8 years ago
- indel haplotype visualization on the command line from BAM files☆12Mar 12, 2014Updated 12 years ago
- Simple interval class for fast fasta access☆10Jun 18, 2012Updated 14 years ago
- Python package for managing sessions in the UCSC Genome Browser.☆11Mar 19, 2015Updated 11 years ago
- Wrappers around NGS peak callers to both call peaks and run IDR☆11Aug 2, 2013Updated 13 years ago
- A 3'-end adapter contaminant trimmer☆98Jan 23, 2018Updated 8 years ago
- perform genotype-phenotype-association tests on a VCF with logistic regression.☆20Dec 15, 2015Updated 10 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Mar 3, 2017Updated 9 years ago
- Creates a rarefaction curve to measure complexity in RNA Seq data using start position☆13Apr 2, 2017Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- a wee tool for random access into BGZF files.☆86May 10, 2018Updated 8 years ago
- Windowed Adaptive Trimming for fastq files using quality☆229May 8, 2017Updated 9 years ago
- Simple tokenised template system for SGE☆10Mar 1, 2023Updated 3 years ago
- a simple C++ library for parsing and manipulating VCF files, + many command-line utilities☆20Mar 22, 2017Updated 9 years ago
- A small library for ranges/intervals, for use with genomic data.☆17Nov 27, 2012Updated 13 years ago
- RNA mapping pipeline☆19Jun 3, 2018Updated 8 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Oct 23, 2026Updated last week
- Infrastructure code to support DNA pipeline☆38May 5, 2015Updated 11 years ago
- MineYourSymbiont : Targetted genome assembly for metagenomics pipeline.☆10Mar 3, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Fast and memory-efficient sequencing error corrector☆96Jan 4, 2026Updated 9 months ago
- Simple tool to verticalize text delimited files.☆36May 6, 2024Updated 2 years ago
- Instantaneous Metagenome Taxonomic Profiling with MetaKSSD☆27Nov 3, 2025Updated 11 months ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11May 2, 2017Updated 9 years ago
- The 3rd incarnation of the Wise package for sequence analysis☆23Jun 19, 2014Updated 12 years ago
- python stuff I use☆21Feb 16, 2026Updated 8 months ago
- Peakzilla is a self-learning algorithm to identify transcription factor binding sites from ChIP-seq data. I would be very happy if you tr…☆21Aug 18, 2025Updated last year
- Abbreviate strings to short, unique identifiers☆24May 10, 2022Updated 4 years ago
- g-suite add-on for merging sheets data into docs templates☆11Jun 21, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A python script used to annotate genomic intervals.☆18May 29, 2020Updated 6 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆95Sep 4, 2019Updated 7 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Apr 8, 2016Updated 10 years ago
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL. This version of the pipeline uses the Rubra/Ruffus framewor…☆33Mar 18, 2014Updated 12 years ago
- Little code snippets that do (hopefully) useful things☆23Jul 24, 2023Updated 3 years ago
- A package for simulating RNA-seq library preparation with parameter estimation☆23Mar 3, 2014Updated 12 years ago
- C++ wrapper to tabix indexer☆18Jun 27, 2025Updated last year