Ultimate ATAC-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.
☆101Nov 25, 2025Updated 6 months ago
Alternatives and similar repositories for atacseq_pipeline
Users that are interested in atacseq_pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Snakemake workflow and MrBiomics module to split, filter, normalize, integrate and select highly variable features of count matrices re…☆54Jan 9, 2026Updated 4 months ago
- A Snakemake workflow and MrBiomics module for easy visualization of genome browser tracks of aligned BAM files (e.g., RNA-seq, ATAC-seq, …☆57Aug 5, 2025Updated 9 months ago
- A general purpose Snakemake workflow and MrBiomics module to perform unsupervised analyses (dimensionality reduction & cluster analysis) …☆67May 18, 2026Updated last week
- MrBiomics: Composable modules and recipes automate bioinformatics for multi-omics analyses☆168Apr 1, 2026Updated last month
- Workflow to Fetch Public Sequencing Data and Metadata Using iSeq and MrBiomics Module.☆46Jun 23, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Snakemake workflow and MrBiomics module for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq re…☆56Dec 7, 2025Updated 5 months ago
- A Snakemake workflow and MrBiomics module for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, p…☆77May 7, 2026Updated 2 weeks ago
- A Snakemake workflow and MrBiomics module for performing and visualizing differential analyses of NGS data powered by the R package limma…☆64Mar 24, 2026Updated 2 months ago
- CeMM's Snakemake SLURM cluster profile☆50Oct 8, 2025Updated 7 months ago
- A Snakemake workflow and MrBiomics module for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered…☆56Sep 5, 2025Updated 8 months ago
- A Snakemake workflow and MrBiomics module for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits …☆59Jan 29, 2026Updated 3 months ago
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆203May 12, 2026Updated 2 weeks ago
- Accessible and interoperable whole slide image analysis☆290May 19, 2026Updated last week
- Assign genotypes to Salmonella Paratyphi A isolates using their whole-genome data.☆10Mar 6, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆16Jun 5, 2022Updated 3 years ago
- A python package for calculating local cell specific networks☆17Nov 17, 2023Updated 2 years ago
- snakemake pipeline for Hi-C post-processing☆22Jun 27, 2024Updated last year
- ☆10Updated this week
- Variant Graph Craft (VGC) is an interactive genomic variant visualization program.☆18May 17, 2024Updated 2 years ago
- Python toolkit for building restartable pipelines☆47Mar 6, 2026Updated 2 months ago
- FINSURF is a tool designed to analyse lists of sequences variants in the human genome.☆12Oct 24, 2022Updated 3 years ago
- ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications☆28Dec 12, 2023Updated 2 years ago
- Functions to analyze copy number aberrations in single-cell data☆13Feb 3, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- An awesome list of learning resources for bioinformatics, genomics and computational biology☆26Apr 15, 2026Updated last month
- Synteny matrix representation with maximum likelihood pipeline☆16Jul 7, 2021Updated 4 years ago
- Assessing the reproducibility of proccessed ChIP-seq peaks☆13Mar 7, 2021Updated 5 years ago
- Guided construction of single cell reference☆15Jul 3, 2023Updated 2 years ago
- Integrative analysis for scRNA-seq and scTCR-/scBCR-seq data☆21May 14, 2026Updated last week
- A end-to-end scRNA-seq analysis pipeline for cross-group comparison☆19May 18, 2025Updated last year
- Personal diploid genome creation and coordinate conversion☆31Apr 1, 2025Updated last year
- Pipeline for the analysis of PE ChIP-seq data☆15Jul 20, 2020Updated 5 years ago
- Materials for short course on Bayesian inference at the Data Science Summer School☆13Jun 28, 2019Updated 6 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- R package: Manifold learning in R☆13Apr 7, 2020Updated 6 years ago
- A set of processes/pipelines for bioinformatics☆15May 14, 2026Updated last week
- Some NGS workflow created by snakemake☆14Jan 15, 2025Updated last year
- Repo to analyze population genetic data with many different methods☆15Oct 23, 2019Updated 6 years ago
- ☆17Dec 15, 2017Updated 8 years ago
- Code for improving the performance of sequence-to-expression models for making individual-specific gene expression predictions by fine-tu…☆16Mar 15, 2026Updated 2 months ago
- ☆17Mar 17, 2023Updated 3 years ago