Alternatives and similar repositories for scrnaseq_processing_seurat

Users that are interested in scrnaseq_processing_seurat are comparing it to the libraries listed below

• epigen / mixscape_seurat
  A Snakemake workflow and MrBiomics module for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq re…
  ☆22Updated last month
• YosefLab / popV
  ☆81Updated last week
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆46Updated last year
• epigen / dea_seurat
  A Snakemake workflow and MrBiomics module for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered…
  ☆23Updated last month
• KChen-lab / METAFlux
  ☆68Updated last year
• BorchLab / Trex
  Using TCR and expression for sequence embedding
  ☆57Updated 6 months ago
• MarioniLab / EmptyDropsMultiome
  Removing empty droplets in multiome datasets
  ☆17Updated last year
• xryanglab / SCASL
  single-cell clustering based on alternative splicing landscapes
  ☆21Updated last year
• aertslab / pycisTopic
  pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
  ☆70Updated 2 weeks ago
• atarashansky / SAMap
  SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.
  ☆77Updated last year
• UPSUTER / GEMLI
  ☆32Updated 6 months ago
• aertslab / create_cisTarget_databases
  Create cisTarget databases
  ☆52Updated last month
• quadbio / scMultiome_analysis_vignette
  Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis
  ☆63Updated last year
• yelabucsf / scrna-parameter-estimation
  Direct estimation of mean and covariance from single cell RNA seq experiments
  ☆114Updated 3 months ago
• epigen / enrichment_analysis
  A Snakemake workflow and MrBiomics module for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, p…
  ☆40Updated last week
• Teichlab / cellhint
  A tool for semi-automatic cell type harmonization and integration
  ☆109Updated 4 months ago
• gillislab / MetaNeighbor
  A method to rapidly assess cell type identity using both functional and random gene sets
  ☆39Updated 7 months ago
• epigen / genome_tracks
  A Snakemake workflow and MrBiomics module for easy visualization of genome browser tracks of aligned BAM files (e.g., RNA-seq, ATAC-seq, …
  ☆25Updated last week
• immunogenomics / SCENT
  Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA
  ☆77Updated 3 months ago
• One-Biosciences / MAYA
  ☆23Updated 11 months ago
• quadbio / RNAseq_tutorial
  ☆29Updated 9 months ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆83Updated 7 months ago
• corceslab / CHOIR
  CHOIR : Clustering Hierarchy Optimization by Iterative Random forests (www.CHOIRclustering.com)
  ☆79Updated 3 months ago
• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆103Updated 11 months ago
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆75Updated 11 months ago
• snehamitra / SCARlink
  ☆55Updated last month
• liulab-dfci / lisa2
  ☆30Updated 2 years ago
• AntonioDeFalco / SCEVAN
  R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …
  ☆107Updated 4 months ago
• chris-mcginnis-ucsf / MULTI-seq
  R implementation of MULTI-seq sample classification workflow
  ☆64Updated last year
• wanglabtongji / SCRIP
  SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…
  ☆20Updated last year