A Snakemake workflow and MrBiomics module for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits or in the MTX matrix file format powered by the R package Seurat.
☆59Jan 29, 2026Updated 2 months ago
Alternatives and similar repositories for scrnaseq_processing_seurat
Users that are interested in scrnaseq_processing_seurat are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A general purpose Snakemake workflow and MrBiomics module to perform unsupervised analyses (dimensionality reduction & cluster analysis) …☆66Updated this week
- A Snakemake workflow and MrBiomics module for easy visualization of genome browser tracks of aligned BAM files (e.g., RNA-seq, ATAC-seq, …☆57Aug 5, 2025Updated 8 months ago
- A Snakemake workflow and MrBiomics module for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq re…☆56Dec 7, 2025Updated 4 months ago
- A Snakemake workflow and MrBiomics module for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered…☆56Sep 5, 2025Updated 7 months ago
- Workflow to Fetch Public Sequencing Data and Metadata Using iSeq and MrBiomics Module.☆45Jun 23, 2025Updated 9 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- RNA-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.☆44Aug 5, 2025Updated 8 months ago
- A Snakemake workflow and MrBiomics module to split, filter, normalize, integrate and select highly variable features of count matrices re…☆54Jan 9, 2026Updated 3 months ago
- A Snakemake workflow and MrBiomics module for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, p…☆75Apr 8, 2026Updated last week
- MrBiomics: Composable modules and recipes automate bioinformatics for multi-omics analyses☆166Apr 1, 2026Updated 2 weeks ago
- A Snakemake workflow and MrBiomics module for performing and visualizing differential analyses of NGS data powered by the R package limma…☆63Mar 24, 2026Updated 3 weeks ago
- Accessible and interoperable whole slide image analysis☆260Apr 9, 2026Updated last week
- Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)☆309Feb 3, 2026Updated 2 months ago
- A toolkit for NGS analysis with Python☆14Jan 18, 2023Updated 3 years ago
- Transparent and robust SARS-CoV-2 variant calling and lineage assignment with comprehensive reporting.☆22Feb 9, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆200Mar 9, 2026Updated last month
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11May 19, 2020Updated 5 years ago
- Efficient data structures and IO for whole slide image analysis☆26Mar 23, 2026Updated 3 weeks ago
- Interpretable PROTAC degradation prediction with structure-informed deep ternary attention framework☆14Oct 6, 2025Updated 6 months ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Feb 12, 2020Updated 6 years ago
- Large language models as universal biomedical simulators☆20Jul 17, 2024Updated last year
- A sample Slurm Cluster Installation Guide on Debian☆14Mar 2, 2018Updated 8 years ago
- FOR my learing☆12Feb 19, 2026Updated last month
- An R package providing datasets useful for testing clustering algorithms☆16Apr 11, 2018Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code to export Mendeley documents and metadata into Notion databases☆12Feb 6, 2023Updated 3 years ago
- An interactive web tool for estimating real-world predictive utility of research findings☆24Mar 31, 2026Updated 2 weeks ago
- ☆13Nov 19, 2021Updated 4 years ago
- The full training script for Enformer - Tensorflow Sonnet☆18Apr 18, 2022Updated 3 years ago
- ☆15Oct 9, 2021Updated 4 years ago
- Ethnicity Annotation from Whole-Exome and Targeted Sequencing Data☆17Mar 18, 2023Updated 3 years ago
- VIGOR4☆21Aug 15, 2025Updated 8 months ago
- Compound ranking predictions from gene expression signatures using ensemble neural network models.☆57Mar 23, 2026Updated 3 weeks ago
- ☆16Jun 15, 2023Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆21Apr 7, 2025Updated last year
- scRNA数据分析中文教程☆11Jul 29, 2019Updated 6 years ago
- Single cell analysis tools for expression from RNA-seq in R☆10Feb 3, 2016Updated 10 years ago
- R package to do the Ligand Receptor Analysis Visualization☆49Mar 24, 2026Updated 3 weeks ago
- Color palettes inspired by Islamic art ☪️🕌☆17Mar 3, 2019Updated 7 years ago
- Repository for "NucleoBench: A Large-Scale Benchmark of Neural Nucleic Acid Design Algorithms"☆27Mar 13, 2026Updated last month
- R code in workflow of chip-seq analysis☆11Nov 20, 2019Updated 6 years ago