Alternatives and similar repositories for scrnaseq_processing_seurat

Users that are interested in scrnaseq_processing_seurat are comparing it to the libraries listed below

• epigen / mixscape_seurat
  A Snakemake workflow and MrBiomics module for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq re…
  ☆22Updated 2 months ago
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆46Updated last year
• snehamitra / SCARlink
  ☆57Updated 2 months ago
• epigen / dea_seurat
  A Snakemake workflow and MrBiomics module for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered…
  ☆25Updated 2 months ago
• Teichlab / cellhint
  A tool for semi-automatic cell type harmonization and integration
  ☆109Updated 5 months ago
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆35Updated 5 years ago
• immunogenomics / SCENT
  Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA
  ☆77Updated 4 months ago
• BorchLab / Trex
  Using TCR and expression for sequence embedding
  ☆58Updated 2 weeks ago
• aertslab / pycisTopic
  pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
  ☆74Updated last month
• xryanglab / SCASL
  single-cell clustering based on alternative splicing landscapes
  ☆21Updated last year
• TheHumphreysLab / plot1cell
  ☆114Updated 5 months ago
• KChen-lab / METAFlux
  ☆69Updated last year
• AntonioDeFalco / SCEVAN
  R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …
  ☆111Updated last week
• YosefLab / popV
  ☆80Updated last week
• yelabucsf / scrna-parameter-estimation
  Direct estimation of mean and covariance from single cell RNA seq experiments
  ☆116Updated 4 months ago
• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆104Updated 11 months ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆84Updated 8 months ago
• MGI-tech-bioinformatics / DNBelab_C_Series_HT_scRNA-analysis-software
  An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets
  ☆106Updated this week
• icbi-lab / luca
  Single-cell Lung Cancer Atlas with 1.2M cells
  ☆68Updated 7 months ago
• UPSUTER / GEMLI
  ☆32Updated 7 months ago
• aertslab / create_cisTarget_databases
  Create cisTarget databases
  ☆53Updated 2 months ago
• quadbio / scMultiome_analysis_vignette
  Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis
  ☆65Updated last year
• shyhihihi / MERCI
  MERCI for tracing of mitochondrion transfer between single cancer and T cells
  ☆22Updated last year
• HetzDra / turboGliph
  R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…
  ☆23Updated 2 years ago
• quadbio / RNAseq_tutorial
  ☆29Updated 10 months ago
• epigen / enrichment_analysis
  A Snakemake workflow and MrBiomics module for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, p…
  ☆42Updated last month
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆108Updated 2 years ago
• buenrostrolab / scPrinter
  ☆45Updated this week
• MarioniLab / EmbryoTimecourse2018
  Data and analysis scripts for our Embryo Timecourse paper.
  ☆68Updated 5 years ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆73Updated 3 weeks ago