A Snakemake workflow and MrBiomics module for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.
☆72Sep 24, 2025Updated 5 months ago
Alternatives and similar repositories for enrichment_analysis
Users that are interested in enrichment_analysis are comparing it to the libraries listed below
Sorting:
- A Snakemake workflow and MrBiomics module for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq re…☆52Dec 7, 2025Updated 2 months ago
- A Snakemake workflow and MrBiomics module for performing and visualizing differential analyses of NGS data powered by the R package limma…☆59Nov 25, 2025Updated 3 months ago
- A Snakemake workflow and MrBiomics module for easy visualization of genome browser tracks of aligned BAM files (e.g., RNA-seq, ATAC-seq, …☆54Aug 5, 2025Updated 7 months ago
- A Snakemake workflow and MrBiomics module to split, filter, normalize, integrate and select highly variable features of count matrices re…☆51Jan 9, 2026Updated last month
- CeMM's Snakemake SLURM cluster profile☆47Oct 8, 2025Updated 4 months ago
- A Snakemake workflow and MrBiomics module for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits …☆55Jan 29, 2026Updated last month
- A Snakemake workflow and MrBiomics module for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered…☆52Sep 5, 2025Updated 6 months ago
- Ultimate ATAC-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.☆96Nov 25, 2025Updated 3 months ago
- RNA-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.☆41Aug 5, 2025Updated 7 months ago
- Workflow to Fetch Public Sequencing Data and Metadata Using iSeq and MrBiomics Module.☆42Jun 23, 2025Updated 8 months ago
- issues for semina "Data Visulization"☆13Dec 23, 2025Updated 2 months ago
- Accessible and interoperable whole slide image analysis☆185Updated this week
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- ☆20Oct 24, 2023Updated 2 years ago
- A toolkit for NGS analysis with Python☆14Jan 18, 2023Updated 3 years ago
- Custom scripts for monotreme genome project☆19Jan 12, 2021Updated 5 years ago
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆190Dec 13, 2025Updated 2 months ago
- Pipelines for NGS data preprocessing by the Bock lab and friends☆22Aug 29, 2022Updated 3 years ago
- Scripts of population genomics analysis☆36May 8, 2018Updated 7 years ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- plot genome alignment synteny☆21May 25, 2020Updated 5 years ago
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated last year
- Learning to Program via Python, and Scientific Python for Programmers course material☆13Jan 23, 2025Updated last year
- scripts for RNA-Seq analysis☆28Feb 20, 2022Updated 4 years ago
- ☆11May 10, 2025Updated 9 months ago
- Readme☆10Mar 15, 2020Updated 5 years ago
- SCCNV: a software tool for identifying copy number variation from single-cell whole-genome sequencing☆13Jul 21, 2020Updated 5 years ago
- Analysis pipelines for QTL discovery and GWAS signals interpretation☆12Sep 3, 2024Updated last year
- Ultrafast method to compute single-sample gene set enrichment scores for gene expression or proteomics data☆20Feb 10, 2026Updated 3 weeks ago
- Killifish genomics scripts☆12Feb 19, 2021Updated 5 years ago
- single cell and bulk RNASeq analysis scripts☆14Jan 13, 2022Updated 4 years ago
- Guides and reference material for the Workflow Description Language.☆16Feb 12, 2026Updated 3 weeks ago
- Data visualization with R☆12Dec 12, 2020Updated 5 years ago
- lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…☆12Nov 2, 2023Updated 2 years ago
- Nextflow pipeline for BWA, BWA2 and STAR alignments☆12Jul 22, 2024Updated last year
- Snakemake workflow to benchmark scRNA-seq data simulators☆14Aug 10, 2022Updated 3 years ago
- Scripts and other material for the assembly and analysis of ratite genomes.☆27Jan 18, 2023Updated 3 years ago
- ☆12Sep 4, 2019Updated 6 years ago
- A Snakemake pipeline for Quality Control of Whole Genome Sequencing data☆14Jan 18, 2022Updated 4 years ago