A Snakemake workflow and MrBiomics module for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.
☆77May 7, 2026Updated 2 weeks ago
Alternatives and similar repositories for enrichment_analysis
Users that are interested in enrichment_analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Snakemake workflow and MrBiomics module for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq re…☆56Dec 7, 2025Updated 5 months ago
- A Snakemake workflow and MrBiomics module for performing and visualizing differential analyses of NGS data powered by the R package limma…☆64Mar 24, 2026Updated 2 months ago
- A Snakemake workflow and MrBiomics module for easy visualization of genome browser tracks of aligned BAM files (e.g., RNA-seq, ATAC-seq, …☆57Aug 5, 2025Updated 9 months ago
- A Snakemake workflow and MrBiomics module to split, filter, normalize, integrate and select highly variable features of count matrices re…☆54Jan 9, 2026Updated 4 months ago
- CeMM's Snakemake SLURM cluster profile☆50Oct 8, 2025Updated 7 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A Snakemake workflow and MrBiomics module for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits …☆59Jan 29, 2026Updated 3 months ago
- A Snakemake workflow and MrBiomics module for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered…☆56Sep 5, 2025Updated 8 months ago
- Ultimate ATAC-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.☆101Nov 25, 2025Updated 6 months ago
- MrBiomics: Composable modules and recipes automate bioinformatics for multi-omics analyses☆168Apr 1, 2026Updated last month
- RNA-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.☆45Aug 5, 2025Updated 9 months ago
- Workflow to Fetch Public Sequencing Data and Metadata Using iSeq and MrBiomics Module.☆46Jun 23, 2025Updated 11 months ago
- Accessible and interoperable whole slide image analysis☆290May 19, 2026Updated last week
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆203May 12, 2026Updated 2 weeks ago
- A toolkit for NGS analysis with Python☆14Jan 18, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- issues for semina "Data Visulization"☆13Dec 23, 2025Updated 5 months ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- Custom scripts for monotreme genome project☆19Jan 12, 2021Updated 5 years ago
- ☆20Oct 24, 2023Updated 2 years ago
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated last year
- Scripts of population genomics analysis☆36May 8, 2018Updated 8 years ago
- Long Read Based SV Calling Tools Analysis☆14Mar 22, 2024Updated 2 years ago
- scripts for RNA-Seq analysis☆28Feb 20, 2022Updated 4 years ago
- plot genome alignment synteny☆20May 25, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Useful bioinformatic scripts☆60Feb 23, 2026Updated 3 months ago
- Scripts and other material for the assembly and analysis of ratite genomes.☆27Jan 18, 2023Updated 3 years ago
- Guides and reference material for the Workflow Description Language.☆16Feb 12, 2026Updated 3 months ago
- ☆10Updated this week
- Snakemake workflow to benchmark scRNA-seq data simulators☆14Aug 10, 2022Updated 3 years ago
- ☆15Jan 13, 2021Updated 5 years ago
- ☆12Sep 4, 2019Updated 6 years ago
- Learning to Program via Python, and Scientific Python for Programmers course material☆13Jan 23, 2025Updated last year
- Readme☆10Mar 15, 2020Updated 6 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- Source code from Zhang et al., (2014) Genomic data of avian phylogenomics project. GigaScience 3:26☆37Dec 21, 2023Updated 2 years ago
- bisulfite sequencing pipeline from fastq to methylation reports☆13Apr 10, 2026Updated last month
- Pipelines for NGS data preprocessing by the Bock lab and friends☆22Aug 29, 2022Updated 3 years ago
- Simulation and optimization of cell clusters.☆12Aug 25, 2025Updated 9 months ago
- A pipeline for whole genome assembly☆16Apr 21, 2022Updated 4 years ago
- Ultrafast method to compute single-sample gene set enrichment scores for gene expression or proteomics data☆24May 2, 2026Updated 3 weeks ago