epigen / enrichment_analysis
A Snakemake workflow and MrBiomics module for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.
☆32Updated last month
Alternatives and similar repositories for enrichment_analysis:
Users that are interested in enrichment_analysis are comparing it to the libraries listed below
- A Snakemake workflow and MrBiomics module for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered…☆18Updated 2 months ago
- A Snakemake workflow and MrBiomics module for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits …☆19Updated 2 months ago
- A Snakemake workflow and MrBiomics module for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq re…☆15Updated 2 months ago
- A Snakemake workflow and MrBiomics module for easy visualization of genome browser tracks of aligned BAM files (e.g., RNA-seq, ATAC-seq, …☆19Updated 2 months ago
- A Snakemake workflow and MrBiomics module for performing and visualizing differential (expression) analyses (DEA) on NGS data powered by …☆24Updated last month
- Ultimate ATAC-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.☆50Updated 2 months ago
- A general purpose Snakemake workflow and MrBiomics module to perform unsupervised analyses (dimensionality reduction & cluster analysis) …☆24Updated 2 months ago
- MrBiomics: Modules & Recipes augment Bioinformatics for Multi-Omics Analyses☆45Updated 2 months ago
- A Snakemake workflow and MrBiomics module to split, filter, normalize, integrate and select highly variable features of count matrices re…☆14Updated last week
- single-cell clustering based on alternative splicing landscapes☆19Updated 11 months ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆29Updated 2 years ago
- ☆32Updated 10 months ago
- Functional Inference of Gene Regulation☆40Updated 7 months ago
- ☆17Updated 6 months ago
- A toolkit for NGS analysis with Python☆14Updated 2 years ago
- ☆15Updated 8 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 4 months ago
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.☆27Updated 3 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- Epimap processing and analysis code repository☆33Updated 2 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆23Updated 7 months ago
- ☆30Updated last month
- Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.☆18Updated 3 years ago
- Functions for single cell data analysis☆30Updated 3 years ago
- ☆36Updated 5 months ago
- A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.☆31Updated 2 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆44Updated 7 months ago
- interactive visualization of single-cell transcriptomes☆11Updated last year
- Single cell epigenomic clustering based on accessibility pattern☆23Updated 2 years ago
- Create cisTarget databases☆45Updated 3 weeks ago