Accessible and interoperable whole slide image analysis for digital pathology in Python
☆334Oct 6, 2026Updated 3 weeks ago
Alternatives and similar repositories for LazySlide
Users that are interested in LazySlide are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Efficient data structures and IO for whole slide image analysis☆34Oct 1, 2026Updated last month
- Toolkit for large-scale whole-slide image processing.☆651Oct 12, 2026Updated 3 weeks ago
- Computational Pathology Toolbox developed by TIA Centre, University of Warwick.☆561Updated this week
- Configure Vitessce using existing Scverse plotting APIs☆25Aug 7, 2026Updated 2 months ago
- RNA-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.☆46Aug 5, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Workflow to Fetch Public Sequencing Data and Metadata Using iSeq and MrBiomics Module.☆47Jun 23, 2025Updated last year
- Integrating histology and spatial transcriptomics - NeurIPS 2024☆447Apr 16, 2026Updated 6 months ago
- A Snakemake workflow and MrBiomics module for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered…☆56Sep 5, 2025Updated last year
- A Snakemake workflow and MrBiomics module for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits …☆60Jan 29, 2026Updated 9 months ago
- A Snakemake workflow and MrBiomics module for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, p…☆77Aug 3, 2026Updated 2 months ago
- Enhanced stain normalization for histopathology images with batch processing support. Optimized for CPU, GPU (CUDA), and MPS (Apple Silic…☆26Aug 9, 2026Updated 2 months ago
- ☆22Jul 21, 2025Updated last year
- A Snakemake workflow and MrBiomics module for performing and visualizing differential analyses of NGS data powered by the R package limma…☆64Mar 24, 2026Updated 7 months ago
- DeepSpot: Deep learning model for predicting spatial transcriptomics from H&E histopathology images. Supports spot-level (Visium) and sin…☆104Oct 26, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- GrandQC tool for tissue detection and quality control in pathology☆130Dec 27, 2025Updated 10 months ago
- InstanSeg is a pytorch-based cell and nucleus segmentation pipeline for fluorescence and brightfield microscopy images.☆251Sep 29, 2026Updated last month
- CeMM's Snakemake SLURM cluster profile☆50Oct 8, 2025Updated last year
- A Snakemake workflow and MrBiomics module to split, filter, normalize, integrate and select highly variable features of count matrices re…☆54Jan 9, 2026Updated 9 months ago
- A Snakemake workflow and MrBiomics module for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq re…☆56Dec 7, 2025Updated 10 months ago
- Leveraging Digital Pathology Foundation Models to characterize the tumor microenvironment (TME)☆38Sep 29, 2026Updated last month
- Powerful, open-source AI tools for digital pathology.☆376Oct 5, 2026Updated 3 weeks ago
- Ultimate ATAC-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.☆104Nov 25, 2025Updated 11 months ago
- An open and interoperable data framework for spatial omics data☆404Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Pathology Foundation Model - Nature Medicine☆798Mar 26, 2025Updated last year
- Stain normalization tools for histological analysis and computational pathology☆193Nov 13, 2025Updated 11 months ago
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆297Updated this week
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆203Updated this week
- [ECCV 2026] A Patient-First Foundation Model for Computational Pathology☆34Jul 22, 2026Updated 3 months ago
- ☆102Jul 7, 2026Updated 3 months ago
- Vision-Language Pathology Foundation Model - Nature Medicine☆539Mar 26, 2025Updated last year
- Standardized benchmark for computational pathology foundation models.☆158Nov 7, 2025Updated 11 months ago
- CellViT: Vision Transformers for Precise Cell Segmentation and Classification☆399Jul 23, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A visual–omics foundation model to bridge histopathology with spatial transcriptomics☆154Jun 3, 2025Updated last year
- Virtual Alignment of pathoLogy Image Series☆247Jun 25, 2025Updated last year
- C++ whole slide image reader with native python bindings☆56Oct 18, 2026Updated 2 weeks ago
- RIPPLE - Spatial transcriptomics analysis of a cell's influence on its neighbors' transcriptome☆41Sep 14, 2026Updated last month
- Multimodal foundation model predicting transcriptome-wide virtual spatial transcriptomics from histology.☆60Sep 4, 2026Updated last month
- Interactive visualization of spatial omics data☆91Sep 8, 2026Updated last month
- Tools for computational pathology☆467Aug 14, 2026Updated 2 months ago