epigen / dea_limma
A Snakemake workflow and MrBiomics module for performing and visualizing differential expression analyses (DEA) on NGS data powered by the R package limma.
☆20Updated last week
Related projects ⓘ
Alternatives and complementary repositories for dea_limma
- A Snakemake workflow and MrBiomics module for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq re…☆11Updated last week
- A Snakemake workflow and MrBiomics module for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits …☆12Updated last week
- Ultimate ATAC-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.☆44Updated last week
- A Snakemake workflow and MrBiomics module to split, filter, normalize, integrate and select highly variable features of count matrices re…☆11Updated last week
- A Snakemake workflow and MrBiomics module for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, p…☆28Updated this week
- A Snakemake workflow and MrBiomics module for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered…☆13Updated last week
- A Snakemake workflow and MrBiomics module for easy visualization of genome browser tracks of aligned BAM files (e.g., RNA-seq, ATAC-seq, …☆16Updated last week
- Mapping pipeline for snmC-seq based technologies.☆16Updated last year
- Tools which deal with multiple single cell measurements☆19Updated 3 weeks ago
- A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.☆29Updated last year
- A general purpose Snakemake workflow and MrBiomics module to perform unsupervised analyses (dimensionality reduction & cluster analysis) …☆22Updated last week
- MrBiomics - Modules & Recipes augment Bioinformatics for Multi-Omics Analyses at Scale☆31Updated last week
- pseudobulking on an AnnData object☆26Updated last year
- Functional Inference of Gene Regulation☆36Updated 4 months ago
- scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two cond…☆36Updated last year
- A toolkit for NGS analysis with Python☆14Updated last year
- ☆32Updated 2 months ago
- Reusable tools for working with next-generation sequencing (NGS) data☆11Updated last month
- A method for analyzing scATAC-seq experiments.☆23Updated last month
- Gene regulatory network containing signed transcription factor-target gene interactions☆61Updated 6 months ago
- ☆37Updated 2 months ago
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆13Updated 9 months ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆15Updated 2 years ago
- SNV calling from single cell sequencing☆83Updated this week
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated last year
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 5 months ago
- Software to compute reproducibility and quality scores for Hi-C data☆43Updated 5 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆43Updated 3 years ago
- Updated DANPOS2 to work with python3☆20Updated 8 months ago
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆11Updated last month