A Snakemake workflow and MrBiomics module to split, filter, normalize, integrate and select highly variable features of count matrices resulting from next-generation sequencing (NGS) experiments (e.g., RNA-seq, ATAC-seq, ChIP-seq, Methyl-seq, miRNA-seq,...) including confounding factor analysis and diagnostic visualizations.
☆54Jan 9, 2026Updated 5 months ago
Alternatives and similar repositories for spilterlize_integrate
Users that are interested in spilterlize_integrate are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CeMM's Snakemake SLURM cluster profile☆50Oct 8, 2025Updated 8 months ago
- A Snakemake workflow and MrBiomics module for performing and visualizing differential analyses of NGS data powered by the R package limma…☆64Mar 24, 2026Updated 2 months ago
- A Snakemake workflow and MrBiomics module for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq re…☆56Dec 7, 2025Updated 6 months ago
- A Snakemake workflow and MrBiomics module for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered…☆56Sep 5, 2025Updated 9 months ago
- Ultimate ATAC-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.☆101Nov 25, 2025Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Snakemake workflow and MrBiomics module for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits …☆59Jan 29, 2026Updated 4 months ago
- Workflow to Fetch Public Sequencing Data and Metadata Using iSeq and MrBiomics Module.☆46Jun 23, 2025Updated 11 months ago
- RNA-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.☆46Aug 5, 2025Updated 10 months ago
- A toolkit for NGS analysis with Python☆14Jan 18, 2023Updated 3 years ago
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆212May 12, 2026Updated last month
- R Bindings for htslib/bcf☆10Oct 4, 2023Updated 2 years ago
- Accessible and interoperable whole slide image analysis☆298Jun 3, 2026Updated last week
- Large language models as universal biomedical simulators☆20Jul 17, 2024Updated last year
- Domain based annotation of transposable elements☆23Oct 8, 2025Updated 8 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- The full training script for Enformer - Tensorflow Sonnet☆18Apr 18, 2022Updated 4 years ago
- Reference Genome Independent Differential DNA Methylation Analysis☆11Aug 19, 2021Updated 4 years ago
- Compound ranking predictions from gene expression signatures using ensemble neural network models.☆78Mar 23, 2026Updated 2 months ago
- ☆22Apr 7, 2025Updated last year
- ☆34Feb 5, 2025Updated last year
- Benchmark of GRNs using the GRETA pipeline☆33Updated this week
- Network-based project to explore gene connectivity through biological scales☆24Oct 21, 2024Updated last year
- Deep learning models to predict enhancers in different Drosophila embryo tissues☆20Dec 10, 2023Updated 2 years ago
- Single Cell Analysis Automated Workflow☆28May 22, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Project metadata manager for PEPs in Python☆40Apr 1, 2026Updated 2 months ago
- A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.☆34Jan 3, 2023Updated 3 years ago
- A Snakemake executor plugin for submitting jobs to a SLURM cluster☆53Jun 8, 2026Updated last week
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆61Aug 17, 2024Updated last year
- Machine learning methods for DNA sequence analysis.☆63Updated this week
- ☆27Dec 25, 2023Updated 2 years ago
- Image Mass Cytometry analysis pipeline☆26Jun 3, 2025Updated last year
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆73Updated this week
- Single cell trajectory detection☆316Apr 21, 2026Updated last month
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A python implementation of spatial entropy☆25Dec 15, 2023Updated 2 years ago
- Computational Optimization of DNA Activity (CODA)☆68Apr 3, 2025Updated last year
- A complete tool set for molecular QTL discovery and analysis☆64Apr 16, 2024Updated 2 years ago
- ☆113Sep 16, 2020Updated 5 years ago
- Cookiecutter template for scverse☆90Updated this week
- GO enrichment with python -- pandas meets networkx☆88Jul 15, 2020Updated 5 years ago
- Morphological profiling using deep learning☆126Updated this week