epigen / dea_seurat
A Snakemake workflow and MrBiomics module for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.
☆17Updated last month
Alternatives and similar repositories for dea_seurat:
Users that are interested in dea_seurat are comparing it to the libraries listed below
- A Snakemake workflow and MrBiomics module for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq re…☆15Updated last month
- A Snakemake workflow and MrBiomics module for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, p…☆32Updated last month
- A Snakemake workflow and MrBiomics module for easy visualization of genome browser tracks of aligned BAM files (e.g., RNA-seq, ATAC-seq, …☆19Updated last month
- A Snakemake workflow and MrBiomics module for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits …☆18Updated last month
- A Snakemake workflow and MrBiomics module for performing and visualizing differential (expression) analyses (DEA) on NGS data powered by …☆24Updated last week
- A general purpose Snakemake workflow and MrBiomics module to perform unsupervised analyses (dimensionality reduction & cluster analysis) …☆24Updated last month
- MrBiomics: Modules & Recipes augment Bioinformatics for Multi-Omics Analyses☆43Updated last month
- Ultimate ATAC-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.☆49Updated last month
- A Snakemake workflow and MrBiomics module to split, filter, normalize, integrate and select highly variable features of count matrices re…☆14Updated last month
- interactive visualization of single-cell transcriptomes☆11Updated last year
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆23Updated 6 months ago
- single-cell clustering based on alternative splicing landscapes☆16Updated 10 months ago
- Functional Inference of Gene Regulation☆39Updated 6 months ago
- A toolkit for NGS analysis with Python☆14Updated 2 years ago
- Reusable tools for working with next-generation sequencing (NGS) data☆11Updated 3 months ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆18Updated 6 months ago
- ☆29Updated last week
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- ☆17Updated 5 months ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆16Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 3 months ago
- The scripts used for the analyses in TOME project☆22Updated 2 months ago
- ☆15Updated 7 months ago
- ☆44Updated 5 months ago
- ☆31Updated 7 months ago
- An analysis toolkit for single-cell methylation sequencing data☆12Updated 2 months ago
- polyApipe☆13Updated 3 months ago
- ☆13Updated last year
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆21Updated 8 months ago
- ☆54Updated 7 months ago