A Snakemake workflow and MrBiomics module for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.
☆56Sep 5, 2025Updated 9 months ago
Alternatives and similar repositories for dea_seurat
Users that are interested in dea_seurat are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Snakemake workflow and MrBiomics module to split, filter, normalize, integrate and select highly variable features of count matrices re…☆54Jan 9, 2026Updated 5 months ago
- A Snakemake workflow and MrBiomics module for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq re…☆56Dec 7, 2025Updated 6 months ago
- A Snakemake workflow and MrBiomics module for performing and visualizing differential analyses of NGS data powered by the R package limma…☆64Mar 24, 2026Updated 2 months ago
- A Snakemake workflow and MrBiomics module for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits …☆59Jan 29, 2026Updated 4 months ago
- A Snakemake workflow and MrBiomics module for easy visualization of genome browser tracks of aligned BAM files (e.g., RNA-seq, ATAC-seq, …☆57Aug 5, 2025Updated 10 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A general purpose Snakemake workflow and MrBiomics module to perform unsupervised analyses (dimensionality reduction & cluster analysis) …☆67May 18, 2026Updated 3 weeks ago
- Workflow to Fetch Public Sequencing Data and Metadata Using iSeq and MrBiomics Module.☆46Jun 23, 2025Updated 11 months ago
- MrBiomics: Composable modules and recipes automate bioinformatics for multi-omics analyses☆169Apr 1, 2026Updated 2 months ago
- A Snakemake workflow and MrBiomics module for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, p…☆77Jun 8, 2026Updated last week
- RNA-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.☆46Aug 5, 2025Updated 10 months ago
- Accessible and interoperable whole slide image analysis☆298Jun 3, 2026Updated last week
- R Bindings for htslib/bcf☆10Oct 4, 2023Updated 2 years ago
- ☆13Mar 23, 2026Updated 2 months ago
- Large language models as universal biomedical simulators☆20Jul 17, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package: Manifold learning in R☆14Apr 7, 2020Updated 6 years ago
- ☆12Oct 30, 2023Updated 2 years ago
- Code to calculate Moran's I in R quickly and memory efficiently☆16Jan 16, 2025Updated last year
- ☆21Sep 1, 2024Updated last year
- An R package providing datasets useful for testing clustering algorithms☆17Apr 11, 2018Updated 8 years ago
- Assign genotypes to Salmonella Paratyphi A isolates using their whole-genome data.☆10Mar 6, 2025Updated last year
- Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)☆320Jun 4, 2026Updated last week
- Marker Selection by matching manifolds and elastic net☆23Oct 22, 2024Updated last year
- SV calling for diploid assemblies☆31Mar 22, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer☆17Nov 30, 2024Updated last year
- ☆15Oct 9, 2021Updated 4 years ago
- Ethnicity Annotation from Whole-Exome and Targeted Sequencing Data☆19Mar 18, 2023Updated 3 years ago
- Compound ranking predictions from gene expression signatures using ensemble neural network models.☆78Mar 23, 2026Updated 2 months ago
- NEPAL is to calculate neuroendocrine (NE) risk score from bulk and single-cell transcriptomics of both human and mouse prostate cancer (P…☆14Apr 23, 2024Updated 2 years ago
- Blood Transcription Modules for interpreting blood transcriptomics data☆11Nov 25, 2024Updated last year
- ☆16May 21, 2026Updated 3 weeks ago
- ☆17Feb 3, 2020Updated 6 years ago
- ☆22Apr 7, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 2 years ago
- Phylommand is a software package to create, manipulate, and/or analyze phylogenetic trees or pairwise alignments.☆11Sep 5, 2024Updated last year
- Snakemake workflow to benchmark scRNA-seq data simulators☆14Aug 10, 2022Updated 3 years ago
- ☆34Feb 5, 2025Updated last year
- Benchmark of GRNs using the GRETA pipeline☆33Updated this week
- A single-cell and spatial RNA-seq database for Alzheimer’s Disease☆27Jul 17, 2024Updated last year
- Repository containing notebooks and scripts associated with spatiotemporal profiling and modeling of brain across adult life☆50Apr 9, 2025Updated last year