A short tutorial on getting started with Snakemake for workflow management
☆57Apr 1, 2019Updated 7 years ago
Alternatives and similar repositories for Snakemake_Tutorial
Users that are interested in Snakemake_Tutorial are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Snakemake tutorial materials☆19Mar 9, 2020Updated 6 years ago
- A simple Snakemake profile for Slurm without --cluster-config☆166Jun 20, 2024Updated last year
- This is a beginner's tutorial to Snakemake☆70Mar 21, 2016Updated 10 years ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆14Mar 14, 2024Updated 2 years ago
- ☆11Jul 3, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Misc. utilities☆11May 21, 2019Updated 7 years ago
- Elastic Network Contact Model (coarse-grained Normal Mode Analysis software)☆14Jul 29, 2017Updated 8 years ago
- Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.☆41Mar 17, 2026Updated 2 months ago
- Analysing the genomic context of mobile genes☆11Jul 21, 2025Updated 10 months ago
- Wrap Python functions and shell commands as content-addressed transformations. Cache results, run them locally or on a cluster, and share…☆23May 6, 2026Updated 2 weeks ago
- FunctionaL Omics Processing platform☆13Jul 25, 2024Updated last year
- Software for in silico evolution - Paul François' group McGill University☆10Mar 16, 2022Updated 4 years ago
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 3 years ago
- A DRAFT, early stage book on snakemake.☆22Nov 1, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆18Nov 26, 2019Updated 6 years ago
- ☆12Mar 31, 2026Updated last month
- Lecture resources for Python for Bioinformatics EANBiT course.☆20Feb 21, 2019Updated 7 years ago
- A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample☆33Mar 10, 2023Updated 3 years ago
- Python pipeline for metabolomics data preprocessing, QC, standardization and annotation☆18Mar 26, 2026Updated last month
- A matrix-like wrapper around PLINK .bed files☆19Sep 6, 2024Updated last year
- A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses☆21Feb 12, 2026Updated 3 months ago
- ☆15May 7, 2019Updated 7 years ago
- ☆10Oct 30, 2018Updated 7 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆19Aug 29, 2023Updated 2 years ago
- Scripts for viewing Slurm batch job resource usages☆11Jan 3, 2022Updated 4 years ago
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆15Aug 27, 2023Updated 2 years ago
- A Python package for mapping sequence aligned data onto protein structures☆37May 26, 2021Updated 4 years ago
- This R package for performing module repertoire analyses and generating fingerprint representations☆18Sep 16, 2021Updated 4 years ago
- Hungarian tokenizer.☆14Mar 15, 2022Updated 4 years ago
- Tabula Muris Senis☆110Jun 5, 2023Updated 2 years ago
- Toolkit to analyze genomic variation data, built on the GATK with Clojure☆66Nov 2, 2015Updated 10 years ago
- Fast, accurate and simple to use command line tool for variant detection in NGS data.☆13Sep 3, 2019Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Normalize CITEseq Data☆70Nov 9, 2025Updated 6 months ago
- cnv-seq with custom bugfix☆10Mar 23, 2013Updated 13 years ago
- This is a repository for CAMPER.☆17Mar 18, 2024Updated 2 years ago
- A curated list of awesome Python frameworks, libraries, software and resources☆10Nov 28, 2022Updated 3 years ago
- In this repo, I explain how can we use clusterProfiler and Tidyverse to perform (GO or KEGG) enrichment analysis in R.☆28Sep 20, 2023Updated 2 years ago
- A Snakefile to parallelize bwa.☆13Oct 25, 2013Updated 12 years ago
- Snakemake skeleton - Build workflows with Snakemake☆19May 17, 2024Updated 2 years ago