A short tutorial on getting started with Snakemake for workflow management
☆59Apr 1, 2019Updated 7 years ago
Alternatives and similar repositories for Snakemake_Tutorial
Users that are interested in Snakemake_Tutorial are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Snakemake tutorial materials☆19Mar 9, 2020Updated 6 years ago
- This is a beginner's tutorial to Snakemake☆69Mar 21, 2016Updated 10 years ago
- ☆14Jan 8, 2020Updated 6 years ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆15Mar 14, 2024Updated 2 years ago
- ☆11Jul 3, 2022Updated 4 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Course website for Johns Hopkins BSPH Statistical Computing (Biostatistics 140.776)☆10Updated this week
- Misc. utilities☆11May 21, 2019Updated 7 years ago
- Elastic Network Contact Model (coarse-grained Normal Mode Analysis software)☆16Jul 29, 2017Updated 9 years ago
- FunctionaL Omics Processing platform☆13Jul 25, 2024Updated 2 years ago
- Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.☆41Mar 17, 2026Updated 6 months ago
- ☆12Mar 31, 2026Updated 6 months ago
- Analysing the genomic context of mobile genes☆11Jul 21, 2025Updated last year
- Wrap Python functions and shell commands as content-addressed transformations. Cache results, run them locally or on a cluster, and share…☆24Updated this week
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆18Nov 26, 2019Updated 6 years ago
- A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample☆34Mar 10, 2023Updated 3 years ago
- Scripts for viewing Slurm batch job resource usages☆11Jan 3, 2022Updated 4 years ago
- A matrix-like wrapper around PLINK .bed files☆18Sep 6, 2024Updated 2 years ago
- A tutorial for DLS-2 migration☆28Sep 16, 2019Updated 7 years ago
- Data and functions to accompany the book "Learning R".☆26Aug 5, 2017Updated 9 years ago
- ☆10Oct 30, 2018Updated 7 years ago
- Reproducible Research in R for Ocean Biosciences: Open-science Training Seminar☆10Sep 27, 2019Updated 7 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆20Aug 29, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Software for in silico evolution - Paul François' group McGill University☆10Mar 16, 2022Updated 4 years ago
- Snakemake template for building reusable and scalable machine learning pipelines with mikropml☆13Feb 26, 2025Updated last year
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆15Aug 27, 2023Updated 3 years ago
- A curated list of bioinformatics bench-marking papers and resources.☆15Nov 27, 2019Updated 6 years ago
- Tabula Muris Senis☆110Jun 5, 2023Updated 3 years ago
- A Python package for mapping sequence aligned data onto protein structures☆37May 26, 2021Updated 5 years ago
- This R package for performing module repertoire analyses and generating fingerprint representations☆19Sep 16, 2021Updated 5 years ago
- A tool for creating Python implementations of SBML models.☆15Oct 5, 2022Updated 4 years ago
- Normalize CITEseq Data☆73Nov 9, 2025Updated 11 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Fast, accurate and simple to use command line tool for variant detection in NGS data.☆14Sep 3, 2019Updated 7 years ago
- ☆10Aug 29, 2023Updated 3 years ago
- cnv-seq with custom bugfix☆10Mar 23, 2013Updated 13 years ago
- A ggplot2 based biplot for principal components-like methods☆17Sep 10, 2026Updated last month
- A Python toolbox for COPASI☆13Jun 5, 2024Updated 2 years ago
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆16Jun 28, 2024Updated 2 years ago
- Train word2vec on Pubmed data, compare 2 GO terms, compare 2 genes.☆12Apr 7, 2017Updated 9 years ago