Alternatives and similar repositories for Snakemake_Tutorial:

Users that are interested in Snakemake_Tutorial are comparing it to the libraries listed below

• snakemake-workflows / snakemake-workflow-template
  A template for standard compliant snakemake-workflows
  ☆92Updated last year
• NBISweden / workshop-reproducible-research
  NBIS/Elixir course: Tools for Reproducible Research
  ☆64Updated this week
• jdblischak / smk-simple-slurm
  A simple Snakemake profile for Slurm without --cluster-config
  ☆153Updated 9 months ago
• harbourlab / SparK
  Publication quality NGS track plotting
  ☆111Updated 2 years ago
• quinlan-lab / sllobs-biostats
  ☆70Updated 3 years ago
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆59Updated last year
• carpentries-incubator / snakemake-novice-bioinformatics
  Introduction to Snakemake for Bioinformatics
  ☆19Updated last week
• IARCbioinfo / BAM-tricks
  Tip and tricks for BAM files
  ☆85Updated 6 years ago
• Snakemake-Profiles / slurm
  Cookiecutter for snakemake slurm profile
  ☆131Updated 11 months ago
• pachterlab / seqspec
  machine-readable file format for genomic library sequence and structure
  ☆119Updated last month
• mikelove / preNivolumabOnNivolumab
  EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment
  ☆56Updated last year
• vanheeringen-lab / gimmemotifs
  Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…
  ☆115Updated last year
• snakemake-workflows / rna-seq-kallisto-sleuth
  A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
  ☆67Updated this week
• csoneson / ARMOR
  Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
  ☆162Updated 3 months ago
• biocswirl-dev-team / BiocSwirl
  BiocSwirl is a series of in-depth swirlify generated courses used to teach bioinformatics workflows in R/Bioconductor using an interactiv…
  ☆30Updated 3 years ago
• mrvollger / SmkTemplate
  A template repository for snakemake workflows.
  ☆38Updated 4 months ago
• ChristopherWilks / megadepth
  BigWig and BAM utilities
  ☆95Updated 11 months ago
• louiejtaylor / grabseqs
  A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
  ☆105Updated 4 years ago
• Snakemake-Profiles / lsf
  Snakemake profile for running jobs on an LSF cluster
  ☆36Updated 7 months ago
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆80Updated last year
• Bioconductor / BiocWorkshops
  2018 Bioconductor Workshops
  ☆75Updated 5 years ago
• daler / trackhub
  create, manage, and upload track hubs for use in the UCSC genome browser
  ☆53Updated 11 months ago
• ivanek / Gviz
  This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.
  ☆79Updated 2 months ago
• grst / nxfvars
  Access nextflow variables from python scripts or notebooks
  ☆21Updated 3 years ago
• jsh58 / NGmerge
  Merging paired-end reads and removing adapters
  ☆44Updated last week
• signalbash / how_are_we_stranded_here
  Check strandedness of RNA-Seq fastq files
  ☆119Updated 2 years ago
• hbctraining / main
  ☆53Updated this week
• snakemake-workflows / ngs-test-data
  A workflow for creating small NGS test data sets, useful for continuous integration.
  ☆21Updated 7 months ago
• jwfoley / bioanalyzeR
  R tools for Agilent electrophoresis data
  ☆45Updated last year
• kvittingseerup / IsoformSwitchAnalyzeR
  An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
  ☆111Updated last month