akira-endo / Intro-PMCMCLinks
Endo A. et al., "Introduction to the particle Markov-chain Monte Carlo." Epidemics, 2019.
☆12Updated 2 years ago
Alternatives and similar repositories for Intro-PMCMC
Users that are interested in Intro-PMCMC are comparing it to the libraries listed below
Sorting:
- Infectious disease model library and utilities☆14Updated 2 years ago
- Code for the talk "Approximate Bayesian inference for latent Gaussian models in Stan"☆13Updated 3 years ago
- Survival modelling via ODEs☆10Updated 2 months ago
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆12Updated 2 years ago
- An R package for Bayes Linear emulation and history matching.☆16Updated 2 months ago
- Bayesian Modelling in Epidemiology Case Line Lists☆13Updated last year
- ☆10Updated 8 months ago
- An R package to help assess the sensitivity of a Bayesian model (fitted with Stan) to the specification of its likelihood and priors☆10Updated last month
- Tools for generalized quantile modeling☆15Updated 2 years ago
- Bayesian spatio-temporal methods for small-area estimation of HIV indicators (PhD thesis, Imperial College London, 2023)☆16Updated 4 months ago
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated last year
- Short course on parametric survival analysis☆15Updated 6 months ago
- R-package for interpretable nonparametric modeling of longitudinal data using additive Gaussian processes. Contains functionality for in…☆25Updated 8 months ago
- ☆16Updated 3 years ago
- Doubly-Robust and Efficient Estimators for Survival and Ordinal Outcomes in RCTs Without Proportional Hazards or Odds Assumptions☆11Updated 3 years ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Updated last year
- Course on nowcasting and forecasting of infectious disease dynamcis☆16Updated last month
- R/haldensify: Highly Adaptive Lasso Conditional Density Estimation☆18Updated 3 months ago
- Monte-Carlo State Space Models☆19Updated 11 months ago
- R package for Bayesian multi-state modelling of chronic disease burden data☆7Updated last year
- Bayesian Inference of Complex Panel Data☆31Updated last month
- Tools for automatically generating local sensitivity measures in Stan.☆36Updated 4 years ago
- R package for statistical inference using panelPOMPs (panel Partially Observed Markov Processes)☆11Updated 8 months ago
- Material for my proposed StanCon talk☆20Updated 4 years ago
- Epidemiological agent-based modelling packages in both python and C++. Published at: https://doi.org/10.5334/jors.449.☆18Updated 3 weeks ago
- Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.☆15Updated 5 years ago
- Examples on INLA within MCMC☆11Updated 8 years ago
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 2 years ago
- Real-Time Use of a Dynamic Model to Measure the Impact of Public Health Interventions on Measles Outbreak Size and Duration — Chicago, Il…☆14Updated 7 months ago
- R package for Bayesian nonparametric adaptive smoothing with Stan☆9Updated 4 years ago