seroanalytics / serosolver
Inference framework for serological data
☆18Updated 3 weeks ago
Alternatives and similar repositories for serosolver:
Users that are interested in serosolver are comparing it to the libraries listed below
- ☆19Updated last week
- Tools for evolutionary forecasting☆11Updated 3 weeks ago
- Basic Tools for the Analysis of Disease Outbreaks☆12Updated 5 years ago
- Utilities and distributions for (birth-death) skyline models.☆10Updated 5 years ago
- Coalescent simulation and likelihood for phylodynamic inference☆14Updated 2 months ago
- Disease outbreak reconstruction from epidemiological and genetic data☆32Updated 7 months ago
- Molecular Epidemiology of Viruses in R☆19Updated 9 years ago
- R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.☆20Updated 2 years ago
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆21Updated this week
- R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parame…☆34Updated last week
- ☆26Updated 4 years ago
- Pathogen evolution, selection and immunity☆45Updated last year
- ☆19Updated 4 years ago
- Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub☆47Updated this week
- Resources for Influenza Research☆23Updated 2 years ago
- Extract raw underlying data from PDF figures☆55Updated last year
- ☆14Updated last year
- Tool for visualising viral lineages in space and time. As seen on covid19.sanger.ac.uk and covglobe.org.☆10Updated 2 years ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17Updated 11 months ago
- Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…☆61Updated 3 weeks ago
- Estimate growth rate advantage of SARS-CoV2 variants of concern based on international genomic surveillance data and multinomial spline f…☆25Updated 2 years ago
- A repository to store COVID-19 variant nowcasts collected as a modeling hub.☆17Updated this week
- Code to test Rt estimates against synthetic data☆17Updated 4 years ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Updated last year
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated last year
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case …☆23Updated 3 months ago
- ☆16Updated 3 years ago
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Updated 3 weeks ago
- Four-in-one value pack of host-virus association data☆24Updated 2 years ago