seroanalytics / serosolverLinks
Inference framework for serological data
☆18Updated last week
Alternatives and similar repositories for serosolver
Users that are interested in serosolver are comparing it to the libraries listed below
Sorting:
- Molecular Epidemiology of Viruses in R☆19Updated 9 years ago
- Tools for evolutionary forecasting☆13Updated last month
- Basic Tools for the Analysis of Disease Outbreaks☆12Updated 5 years ago
- An R package for the analysis of infectious disease transmission data☆10Updated 3 years ago
- ☆19Updated 2 months ago
- Coalescent simulation and likelihood for phylodynamic inference☆14Updated last month
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆22Updated this week
- Utilities and distributions for (birth-death) skyline models.☆10Updated 5 years ago
- Disease outbreak reconstruction from epidemiological and genetic data☆33Updated 9 months ago
- ☆14Updated last year
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated last year
- R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.☆20Updated 2 years ago
- Pathogen evolution, selection and immunity☆45Updated last year
- ☆19Updated 4 years ago
- Estimate growth rate advantage of SARS-CoV2 variants of concern based on international genomic surveillance data and multinomial spline f…☆25Updated 2 years ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parame…☆36Updated 3 weeks ago
- An R package with over 50 highly cited, read-to-use, up-to-date COVID-19 pandemic data resources☆59Updated 3 years ago
- R package for statistical inference of spatiotemporal partially observed Markov processes☆11Updated 6 months ago
- ☆41Updated 2 weeks ago
- Infectious disease model library and utilities☆14Updated 2 years ago
- An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case …☆24Updated 5 months ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17Updated last year
- Extract raw underlying data from PDF figures☆55Updated last year
- Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…☆61Updated 3 weeks ago
- Tool for visualising viral lineages in space and time. As seen on covid19.sanger.ac.uk and covglobe.org.☆10Updated 2 years ago
- R package for estimating excess deaths from daily count data☆20Updated 2 months ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Updated last year
- Code to test Rt estimates against synthetic data☆18Updated 4 years ago
- Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub☆48Updated this week