anastasiachtz / COMMAND_stanView external linksLinks
Contemporary statistical inference for infectious disease models using Stan
☆16Mar 3, 2019Updated 6 years ago
Alternatives and similar repositories for COMMAND_stan
Users that are interested in COMMAND_stan are comparing it to the libraries listed below
Sorting:
- Analysis of global migration patterns of seasonal influenza viruses☆22Jul 24, 2019Updated 6 years ago
- An R package for the analysis of infectious disease transmission data☆10Nov 8, 2021Updated 4 years ago
- Implementation of the LOSSGRAD optimization algorithm☆15Mar 21, 2019Updated 6 years ago
- Basic Tools for the Analysis of Disease Outbreaks☆12Oct 24, 2019Updated 6 years ago
- Repository containing code for getting statistical guarantees on properties of BNNs☆13Apr 24, 2019Updated 6 years ago
- Supplementary Material to accompany the paper, DJ Warne, SA Sisson, C Drovandi (2019) Acceleration of expensive computations in Bayesian…☆13Oct 23, 2020Updated 5 years ago
- Coalescent simulation and likelihood for phylodynamic inference☆14May 15, 2025Updated 9 months ago
- Course on nowcasting and forecasting of infectious disease dynamics☆23Feb 9, 2026Updated last week
- Updates to the synthetic contact matrices☆39Sep 27, 2023Updated 2 years ago
- Derive social mixing matrices from survey data.☆43Updated this week
- Code and data for On the Predictability of Infectious Disease Outbreaks by SV Scarpino & G Petri☆21Oct 1, 2025Updated 4 months ago
- Modelling transmission dynamics of COVID-19, while accounting for presymptomatic infectiousness, time-varying ascertainment rates, transm…☆22Jul 18, 2020Updated 5 years ago
- Simulating virus evolution and epidemiology☆21Feb 22, 2022Updated 3 years ago
- Repository to the R package nowcaster, nowcasting with INLA☆23Sep 20, 2025Updated 4 months ago
- Utilities for Scoring and Assessing Predictions☆60Feb 9, 2026Updated last week
- Supplementary code for paper "Bayesian workflow for disease transmission model".☆28Feb 3, 2021Updated 5 years ago
- ☆10Feb 9, 2026Updated last week
- Inference of substructure properties in strong lensing systems with machine learning. Code repository associated with https://arxiv.org/a…☆32Oct 17, 2019Updated 6 years ago
- R-package for building and fitting Bayesian ODE models in Stan☆29Sep 13, 2024Updated last year
- ☆29Jun 16, 2025Updated 8 months ago
- Basic Epidemic, Activity, and Response COVID-19 model☆31Jul 6, 2020Updated 5 years ago
- Density estimation likelihood-free inference. No longer actively developed see https://github.com/mackelab/sbi instead☆73Jul 3, 2020Updated 5 years ago
- A library of MATLAB functions for visualization, processing, and analysis of output from Bayesian models fit with Stan.☆10Dec 17, 2021Updated 4 years ago
- Repository for Deep Active Localization research and benchmarks☆36May 12, 2020Updated 5 years ago
- ☆35Jun 10, 2019Updated 6 years ago
- Guidelines and forecasts for a collaborative U.S. influenza forecasting project.☆39May 4, 2020Updated 5 years ago
- This notebook is related to the paper: Machine learning in physics: a short guide, to appear on Europhysics Letters (EPL).☆11Jul 16, 2024Updated last year
- MATLAB code for Stein Point Markov Chain Monte Carlo.☆13Jul 3, 2019Updated 6 years ago
- MMA Webscraping for Data Science☆11Jan 11, 2018Updated 8 years ago
- ☆13Feb 9, 2026Updated last week
- Identifying Nuances in Fake News vs. Satire: Using Semantic and Linguistic Cues (NLP4IF, EMNLP-IJCNLP 2019)☆11Dec 21, 2020Updated 5 years ago
- An R package containing functions used in the CDC Flu Forecasting competition☆11Oct 18, 2020Updated 5 years ago
- pFedDef: Defending Grey-Box Attacks for Personalized Federated Learning☆10May 31, 2023Updated 2 years ago
- Examples on INLA within MCMC☆12May 15, 2017Updated 8 years ago
- Code associated with A population-level SEIR model for COVID-19 scenarios (updated) by James P. Gleeson, Thomas Brendan Murphy, Joseph D.…☆11May 4, 2021Updated 4 years ago
- Canonical normalizing flows☆10Apr 30, 2019Updated 6 years ago
- Material do curso de text mining para cientistas sociais do CPDOC☆11May 8, 2025Updated 9 months ago
- A package containing several useful R-functions for reading and plotting the results of Birth-Death Skyline (BDSKY) runs in BEAST2.☆12Nov 28, 2018Updated 7 years ago
- Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees☆12Sep 6, 2023Updated 2 years ago