Contemporary statistical inference for infectious disease models using Stan
☆16Mar 3, 2019Updated 7 years ago
Alternatives and similar repositories for COMMAND_stan
Users that are interested in COMMAND_stan are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for reconstructing influenza dynamics from surveillance data using evidence synthesis techniques☆21Apr 26, 2022Updated 3 years ago
- Analysis of global migration patterns of seasonal influenza viruses☆22Jul 24, 2019Updated 6 years ago
- ☆29Jun 16, 2025Updated 9 months ago
- Updates to the synthetic contact matrices☆39Sep 27, 2023Updated 2 years ago
- Basic Tools for the Analysis of Disease Outbreaks☆12Oct 24, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Derive social mixing matrices from survey data.☆43Mar 2, 2026Updated 3 weeks ago
- Course on nowcasting and forecasting of infectious disease dynamics☆23Mar 2, 2026Updated 3 weeks ago
- Modelling transmission dynamics of COVID-19, while accounting for presymptomatic infectiousness, time-varying ascertainment rates, transm…☆22Jul 18, 2020Updated 5 years ago
- Code associated with A population-level SEIR model for COVID-19 scenarios (updated) by James P. Gleeson, Thomas Brendan Murphy, Joseph D.…☆11May 4, 2021Updated 4 years ago
- Supplementary Material to accompany the paper, DJ Warne, SA Sisson, C Drovandi (2019) Acceleration of expensive computations in Bayesian…☆13Oct 23, 2020Updated 5 years ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆133Mar 13, 2026Updated 2 weeks ago
- The Moving Epidemic Method R Package☆16Oct 7, 2025Updated 5 months ago
- Iterate multiple realisations of stochastic models☆20Aug 15, 2025Updated 7 months ago
- Utilities for Scoring and Assessing Predictions☆61Mar 18, 2026Updated last week
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- ☆18Mar 20, 2026Updated last week
- Scripts for estimating and visualizing epidemiological modeling of an epidemic (developed for COVID-19)☆13May 28, 2021Updated 4 years ago
- Basic Epidemic, Activity, and Response COVID-19 model☆31Jul 6, 2020Updated 5 years ago
- COVID-19 Open-source Infection Dynamics☆15Sep 10, 2021Updated 4 years ago
- R-package for building and fitting Bayesian ODE models in Stan☆30Sep 13, 2024Updated last year
- "Discontinuous Hamiltonian Monte Carlo for sampling discrete parameters" by Akihiko Nishimura, David Dunson, Jianfeng Lu☆29Aug 18, 2018Updated 7 years ago
- Code and data for On the Predictability of Infectious Disease Outbreaks by SV Scarpino & G Petri☆21Oct 1, 2025Updated 5 months ago
- A library of MATLAB functions for visualization, processing, and analysis of output from Bayesian models fit with Stan.☆10Dec 17, 2021Updated 4 years ago
- Supplementary code for paper "Bayesian workflow for disease transmission model".☆28Feb 3, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Quantile Regression with R, JAGS and Stan☆13Oct 15, 2015Updated 10 years ago
- Paired comparison model using Gaussian Process prior☆13Feb 21, 2019Updated 7 years ago
- A package containing several useful R-functions for reading and plotting the results of Birth-Death Skyline (BDSKY) runs in BEAST2.☆12Nov 28, 2018Updated 7 years ago
- Repository to the R package nowcaster, nowcasting with INLA☆23Sep 20, 2025Updated 6 months ago
- Inference framework for serological data☆20Feb 18, 2026Updated last month
- The R package 'phylosamp' implements novel tools that estimate the probability of transmission between two cases given phylogenetic linka…☆13May 23, 2023Updated 2 years ago
- Datasets and analysis of Novel Coronavirus (COVID-19) outbreak in Greece☆15Sep 11, 2024Updated last year
- Shiny app providing estimates of future bed occupancy given recent admissions☆12Jul 2, 2020Updated 5 years ago
- ☆12Oct 11, 2022Updated 3 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A tool for comparing the design and analysis of surveys by simulating spatially-correlated populations☆12Sep 16, 2025Updated 6 months ago
- ☆10Feb 9, 2026Updated last month
- This project holds a line-list data (including mobility and exposure history, as well as epidemiological Timelines) of 10,000+ COVID-19 c…