thibautjombart / OutbreakToolsLinks
Basic Tools for the Analysis of Disease Outbreaks
☆12Updated 5 years ago
Alternatives and similar repositories for OutbreakTools
Users that are interested in OutbreakTools are comparing it to the libraries listed below
Sorting:
- ☆19Updated 3 weeks ago
- Disease outbreak reconstruction from epidemiological and genetic data☆34Updated last year
- ggplot2-style plots with base R graphics☆70Updated last week
- Molecular Epidemiology of Viruses in R☆19Updated 10 years ago
- R package to reconstruct ancestral networks inferred with RevBayes☆13Updated 4 months ago
- Phylogenetic Comparative Tools for Missing Data and Within-Species Variation☆32Updated 2 years ago
- taxonomy R packages☆43Updated last year
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17Updated last year
- ☆18Updated 4 years ago
- Implementation of the EM algorithm for the detection of shifts in a phylogeny.☆18Updated 2 weeks ago
- An R package for the analysis of infectious disease transmission data☆10Updated 3 years ago
- Create, modify and analyse phylogenetic trees in R☆23Updated last week
- Utilities and distributions for (birth-death) skyline models.☆10Updated 6 years ago
- Inference framework for serological data☆18Updated 3 weeks ago
- phylogenetic networks using ggplot2 and ggtree☆11Updated 3 months ago
- ☆27Updated 4 years ago
- Interface to Open Tree of Life API☆45Updated 2 years ago
- NBZIMM (Negative Binomial and Zero-Inflated Mixed Models)☆36Updated last year
- Computing resources for peace of mind☆13Updated 2 years ago
- Tools for evolutionary forecasting☆14Updated 3 weeks ago
- Coalescent simulation and likelihood for phylodynamic inference☆14Updated 4 months ago
- ☆19Updated 4 years ago
- a take on ordination plots using ggplot2☆65Updated last year
- babette is an R package to work with BEAST2☆46Updated last month
- Class materials for BIOST 509☆59Updated 5 years ago
- An R pakage to calculate diversity through Hill Numbers☆34Updated last year
- Submit R code to a Slurm cluster☆55Updated 2 years ago
- R package to run BEAST2☆11Updated last month
- A minimal example of using bookdown to write a book for Chapman & Hall/CRC☆76Updated 3 years ago
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆22Updated this week