thibautjombart / OutbreakToolsLinks
Basic Tools for the Analysis of Disease Outbreaks
☆12Updated 6 years ago
Alternatives and similar repositories for OutbreakTools
Users that are interested in OutbreakTools are comparing it to the libraries listed below
Sorting:
- ☆19Updated last month
- Disease outbreak reconstruction from epidemiological and genetic data☆34Updated last year
- ☆19Updated 4 years ago
- ggplot2-style plots with base R graphics☆70Updated 2 months ago
- Implementation of the EM algorithm for the detection of shifts in a phylogeny.☆18Updated 2 months ago
- Molecular Epidemiology of Viruses in R☆19Updated 10 years ago
- Coalescent simulation and likelihood for phylodynamic inference☆14Updated 6 months ago
- phylogenetic networks using ggplot2 and ggtree☆11Updated last month
- Inference framework for serological data☆19Updated 3 months ago
- Utilities and distributions for (birth-death) skyline models.☆10Updated 6 years ago
- diversitree: comparative phylogenetic analyses of diversification☆33Updated last year
- Computing resources for peace of mind☆13Updated 2 years ago
- Phylogenetic Comparative Tools for Missing Data and Within-Species Variation☆32Updated 2 years ago
- NBZIMM (Negative Binomial and Zero-Inflated Mixed Models)☆36Updated last year
- ☆52Updated 3 weeks ago
- R package to run BEAST2☆11Updated this week
- Four-in-one value pack of host-virus association data☆26Updated 3 years ago
- R package for estimating excess deaths from daily count data☆21Updated last week
- Submit R code to a Slurm cluster☆55Updated 2 years ago
- A textbook for phylogenetic comparative methods.☆43Updated 6 years ago
- An R package for the analysis of infectious disease transmission data☆10Updated 4 years ago
- babette is an R package to work with BEAST2☆46Updated last month
- Add statistical test or annotation to your ggplot2 plots,☆46Updated 3 years ago
- ☆19Updated 2 weeks ago
- An R pakage to calculate diversity through Hill Numbers☆35Updated last month
- Perform phylogenetic path analysis in R.☆13Updated 3 months ago
- a take on ordination plots using ggplot2☆65Updated last year
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17Updated last year
- Estimate growth rate advantage of SARS-CoV2 variants of concern based on international genomic surveillance data and multinomial spline f…☆25Updated 2 years ago
- A collection of Poisson lognormal models for multivariate count data analysis☆58Updated last month