Basic Tools for the Analysis of Disease Outbreaks
☆12Oct 24, 2019Updated 6 years ago
Alternatives and similar repositories for OutbreakTools
Users that are interested in OutbreakTools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis of global migration patterns of seasonal influenza viruses☆22Jul 24, 2019Updated 7 years ago
- Coalescent simulation and likelihood for phylodynamic inference☆16May 15, 2025Updated last year
- Exploring tree diversity☆14Mar 13, 2017Updated 9 years ago
- R interface to Baidu Maps API geocoding services☆10Sep 28, 2020Updated 5 years ago
- Contemporary statistical inference for infectious disease models using Stan☆16Mar 3, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Spread visualizes how viruses and other pathogens are spreading in time and space. It creates compellable shareable, interactive and time…☆20Jul 2, 2026Updated 3 weeks ago
- Bayesian estimation of Rt (C code)☆13Mar 18, 2020Updated 6 years ago
- Simulating virus evolution and epidemiology☆21Feb 22, 2022Updated 4 years ago
- Covid19 microsimulation☆14May 6, 2020Updated 6 years ago
- R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic☆12Sep 10, 2024Updated last year
- R tools for posterior analyses using BEAST☆20Apr 10, 2019Updated 7 years ago
- The R package 'phylosamp' implements novel tools that estimate the probability of transmission between two cases given phylogenetic linka…☆14May 23, 2023Updated 3 years ago
- ☆23Jul 5, 2026Updated 2 weeks ago
- outbreaks: an R package compiling disease outbreak data☆54Dec 8, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- R Package of methods and data for spatial epidemiology☆34Feb 22, 2023Updated 3 years ago
- Tibber smartthings app☆21Feb 10, 2023Updated 3 years ago
- Disease outbreak reconstruction from epidemiological and genetic data☆36Apr 20, 2026Updated 3 months ago
- ☆12Oct 11, 2022Updated 3 years ago
- ☆10Nov 4, 2021Updated 4 years ago
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Sep 6, 2013Updated 12 years ago
- R package to run BEAST2☆11Dec 8, 2025Updated 7 months ago
- Scripts for building the ARTIC lab-on-an-SSD☆11Sep 9, 2020Updated 5 years ago
- This is the home for the RandomForest-based production code for WorldPop's population maps.☆18Sep 19, 2016Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Pareto smoothed importance sampling☆18Updated this week
- Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.☆16Jul 11, 2019Updated 7 years ago
- An R package for simulating line lists☆11Jul 1, 2026Updated 3 weeks ago
- Shiny app providing estimates of future bed occupancy given recent admissions☆12Jul 2, 2020Updated 6 years ago
- Posterior Analysis of Coalescent Trees☆14Aug 6, 2015Updated 10 years ago
- An R package to import, clean, and store case data☆24Dec 9, 2022Updated 3 years ago
- An R package for using dplyr on matched tree and data objects☆33Feb 19, 2025Updated last year
- Inference of putative transmission phylogenetic clusters☆12Oct 13, 2020Updated 5 years ago
- scatter pie plot☆67Sep 12, 2025Updated 10 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- R package for estimating excess deaths from daily count data☆20Dec 3, 2025Updated 7 months ago
- An R package for Bayes Linear emulation and history matching.☆19Dec 1, 2025Updated 7 months ago
- Register exponential family curves☆17Feb 16, 2026Updated 5 months ago
- Optimise PCR primer-set grouping for genetics research☆18Jun 3, 2026Updated last month
- Welcome to the StrainHub Repo - Files and Data - StrainHub Online:☆18Jun 26, 2022Updated 4 years ago
- Language family classifications as Newick trees☆12Aug 8, 2024Updated last year
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆33Jun 10, 2026Updated last month