thibautjombart / OutbreakTools
Basic Tools for the Analysis of Disease Outbreaks
☆12Updated 5 years ago
Alternatives and similar repositories for OutbreakTools:
Users that are interested in OutbreakTools are comparing it to the libraries listed below
- Molecular Epidemiology of Viruses in R☆19Updated 9 years ago
- Coalescent simulation and likelihood for phylodynamic inference☆13Updated last month
- R package to run BEAST2☆11Updated this week
- Disease outbreak reconstruction from epidemiological and genetic data☆31Updated 4 months ago
- ☆19Updated 2 weeks ago
- An R pakage to calculate diversity through Hill Numbers☆33Updated 9 months ago
- phylogenetic networks using ggplot2 and ggtree☆11Updated 2 years ago
- Perform phylogenetic path analysis in R.☆13Updated 4 months ago
- ggplot2-style plots with base R graphics☆69Updated 6 months ago
- babette is an R package to work with BEAST2☆44Updated this week
- Biology 202 Course Website☆18Updated 4 years ago
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Updated this week
- A textbook for phylogenetic comparative methods.☆42Updated 5 years ago
- Phylogenetic Comparative Tools for Missing Data and Within-Species Variation☆31Updated 2 years ago
- Computing resources for peace of mind☆13Updated last year
- Create, modify and analyse phylogenetic trees in R☆20Updated 2 weeks ago
- ☆33Updated 2 months ago
- Submit R code to a Slurm cluster☆53Updated last year
- scatter pie plot☆61Updated 3 weeks ago
- Dendrograms for Evolutionary Analysis☆11Updated 5 years ago
- useful functions for ggplot☆18Updated 2 weeks ago
- Utilities and distributions for (birth-death) skyline models.☆10Updated 5 years ago
- A model-based visualization method for microbiome data☆16Updated last year
- Estimate Permutation p-Values for Random Forest Importance Metrics☆27Updated last year
- Functions for phylogenetic analyses☆31Updated 11 months ago
- This is a read-only mirror of the CRAN R package repository. ggpmisc — Miscellaneous Extensions to 'ggplot2'. Homepage: https://docs.r4…☆15Updated 2 months ago
- R package to perform sensitivity analysis for comparative methods☆12Updated 4 years ago
- Ordination lectures for Ecological Methods in Oulu☆18Updated 5 months ago
- An Amazing Shiny App☆17Updated 3 years ago
- Implementation of corrplot using ggplot2☆37Updated 2 years ago