thibautjombart / OutbreakToolsLinks
Basic Tools for the Analysis of Disease Outbreaks
☆12Updated 6 years ago
Alternatives and similar repositories for OutbreakTools
Users that are interested in OutbreakTools are comparing it to the libraries listed below
Sorting:
- ☆19Updated last week
- Disease outbreak reconstruction from epidemiological and genetic data☆34Updated last year
- ggplot2-style plots with base R graphics☆71Updated last month
- R package for estimating excess deaths from daily count data☆20Updated 6 months ago
- Create, modify and analyse phylogenetic trees in R☆23Updated last month
- Coalescent simulation and likelihood for phylodynamic inference☆14Updated 5 months ago
- phylogenetic networks using ggplot2 and ggtree☆11Updated last week
- Perform phylogenetic path analysis in R.☆13Updated last month
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17Updated last year
- Four-in-one value pack of host-virus association data☆26Updated 3 years ago
- Phylogenetic Comparative Tools for Missing Data and Within-Species Variation☆32Updated 2 years ago
- ☆19Updated 4 years ago
- R package to perform sensitivity analysis for comparative methods☆14Updated 5 years ago
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆23Updated this week
- ☆50Updated last week
- Molecular Epidemiology of Viruses in R☆19Updated 10 years ago
- NBZIMM (Negative Binomial and Zero-Inflated Mixed Models)☆36Updated last year
- Computing resources for peace of mind☆13Updated 2 years ago
- A modular Bayesian framework for real-time infectious disease surveillance. Provides tools for nowcasting, reproduction number estimation…☆62Updated last week
- Utilities and distributions for (birth-death) skyline models.☆10Updated 6 years ago
- An R package for the analysis of infectious disease transmission data☆10Updated 3 years ago
- An R pakage to calculate diversity through Hill Numbers☆34Updated last year
- Inference framework for serological data☆19Updated last month
- Tools for evolutionary forecasting☆14Updated last month
- Dendrograms for Evolutionary Analysis☆11Updated 5 years ago
- Interface to Open Tree of Life API☆45Updated 2 years ago
- Conditional Auto-Regressive LASSO in R☆20Updated 2 years ago
- a take on ordination plots using ggplot2☆66Updated last year
- R package to run BEAST2☆11Updated 2 months ago
- Biology 202 Course Website☆18Updated 5 years ago