thibautjombart / OutbreakToolsLinks
Basic Tools for the Analysis of Disease Outbreaks
☆12Updated 5 years ago
Alternatives and similar repositories for OutbreakTools
Users that are interested in OutbreakTools are comparing it to the libraries listed below
Sorting:
- Disease outbreak reconstruction from epidemiological and genetic data☆35Updated 10 months ago
- Molecular Epidemiology of Viruses in R☆19Updated 9 years ago
- ☆19Updated last week
- Coalescent simulation and likelihood for phylodynamic inference☆14Updated 2 months ago
- Utilities and distributions for (birth-death) skyline models.☆10Updated 5 years ago
- An R package for the analysis of infectious disease transmission data☆10Updated 3 years ago
- Tools for evolutionary forecasting☆13Updated last week
- ☆49Updated last week
- ggplot2-style plots with base R graphics☆70Updated last week
- R package for estimating excess deaths from daily count data☆20Updated 4 months ago
- asremlPlus is an R package that augments the use of 'ASReml-R' and 'ASReml4-R' in fitting mixed models☆18Updated 3 weeks ago
- phylogenetic networks using ggplot2 and ggtree☆11Updated 3 weeks ago
- NBZIMM (Negative Binomial and Zero-Inflated Mixed Models)☆36Updated last year
- Implementation of the EM algorithm for the detection of shifts in a phylogeny.☆18Updated 5 months ago
- R package to perform sensitivity analysis for comparative methods☆14Updated 5 years ago
- ☆19Updated 4 years ago
- Interface to Open Tree of Life API☆44Updated 2 years ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17Updated last year
- Phylogenetic Comparative Tools for Missing Data and Within-Species Variation☆32Updated 2 years ago
- Submit R code to a Slurm cluster☆55Updated 2 years ago
- Perform phylogenetic path analysis in R.☆13Updated last week
- Dendrograms for Evolutionary Analysis☆11Updated 5 years ago
- Computing resources for peace of mind☆13Updated 2 years ago
- ☆27Updated 4 years ago
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆22Updated this week
- Inference framework for serological data☆18Updated 2 weeks ago
- Add statistical test or annotation to your ggplot2 plots,☆46Updated 3 years ago
- Create, modify and analyse phylogenetic trees in R☆23Updated this week
- taxonomy R packages☆44Updated last year
- An R pakage to calculate diversity through Hill Numbers☆34Updated last year